Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00977 ATGGCTGCTATTTTCCCACTAAGCGGAGGAGGAAGACGATTTAACGAAGGCGACGAACAACAACGACAAAACAGCAACATCCACAGCGAGTATTATCAAGAAAACTCGTTTTGGTATAAAAATAACAATGAGAATCTATCGTACAAGGATTACGAGCTACAGGAAGAACAGCTTCTTCATCATCCCCAGCTCGATATGCACTCGTCAGTCTTCGGGCTAGCCATTGGTCCAACTCAGGGCTCAATCGTCGTCTCCGGAGAGTCGTCGTCCAGATCGGCGACGATAGTTATAAGTTCGGGAGGCGGAGGAGGAATGAGTTGCCAAGATTGTGGAAATCAAGCGAAGAAAGACTGCGTTTACATGAGGTGTAGAAGTTGCTGCAAGAGCCGAGGGTTTGAGTGCTCCACTCATGTTAAAAGCACATGGGTTTCTGCTGCTAAGCGACGAGAACGACTCAATAACTTGGAAAATCAGAAGAACCAGCTTCATCTTCTTCACCAAGAGATTCCGAAAAGGCAGAGAGAGAATCTGTCTTCTTCTTCTCTTGTCTGCACTCCAATTGCATCAGGGTTTGAAGATGGAATTTTTCCCCCCGAAGTGAGCTCTCCAGCTGTTTTCCGTTGCGTTAGAGTGACCGCTTTTGATGAGACAGACGACAATTATGCGTATCAGACGGCTGTAAATATCGGAGGCCATGTGTTCAAGGGAATTCTCTACGATCAAGGCCGTGAATCAAACTACGCCACAGGCGAAAGCTCCTCCGTGGGCGGCAGCGGTGATCTGATCGCGGCTGGAACAACTGCAGTTGGGGACAGCGCAGTAGCTCCATTAATTGCTCCTCCTTTATATCCAGCTCCTCTTAACAGCTTCATCGCTGGTACGCAATTTTTCCTCCCGCCAAGACCTTGA 909 48.07 MAAIFPLSGGGRRFNEGDEQQRQNSNIHSEYYQENSFWYKNNNENLSYKDYELQEEQLLHHPQLDMHSSVFGLAIGPTQGSIVVSGESSSRSATIVISSGGGGGMSCQDCGNQAKKDCVYMRCRSCCKSRGFECSTHVKSTWVSAAKRRERLNNLENQKNQLHLLHQEIPKRQRENLSSSSLVCTPIASGFEDGIFPPEVSSPAVFRCVRVTAFDETDDNYAYQTAVNIGGHVFKGILYDQGRESNYATGESSSVGGSGDLIAAGTTAVGDSAVAPLIAPPLYPAPLNSFIAGTQFFLPPRP 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10398751 10400074 + Bma017317.2 Bma03g00977 79650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00977 302 Pfam Domain of unknown function (DUF702) 104 244 - -
Bma03g00977 302 PANTHER PROTEIN SHORT INTERNODES 1 298 - -
Bma03g00977 302 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 196 242 IPR006511 -
Bma03g00977 302 Coils Coil 145 165 - -
Bma03g00977 302 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 298 IPR007818 GO:0003700|GO:0006355
Bma03g00977 302 MobiDBLite consensus disorder prediction 1 23 - -
Bma03g00977 302 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 106 148 IPR006510 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00977 Bma09g00096 CCT
Bma03g00977 Bma15g00973 CCT
Bma03g00977 Bma09g00096 ECH
Bma03g00977 Bma15g00973 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02345 Bma-Chr1:81040150 Bma03g00977 Bma-Chr3:10398751 2.79E-65 dispersed
Bma03g00977 Bma-Chr3:10398751 Bma15g00973 Bma-Chr15:37616023 1.86E-86 dispersed
Bma01g00741 Bma-Chr1:6793248 Bma03g00977 Bma-Chr3:10398751 3.22E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57050 PF05142 DUF702 8.20E-61 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00977 - - jre:108993505 302.753