Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00979 ATGAGAAAGCAGGGCACTAGTCCGACGTCTTTTACATTTTCTGCACTTTTCAAGGCTTCTGGCGCTGTTCTTAACGTGGAATTGGGTAGGCAAGTACATGCTCAAACAATTTTGGTAGGAGGGTTTGCTTCTGATTTATACGTTGGTAATACGATGATTGATATGTACGTAAAATGCGGGTTTTTGGAATGTGGGCGCAAGGTGTTTGATGAAATGCCTGACAGAGATATTATCTCTTGGACAGAGTTGATAGTTGCGTATTCCAAAAATGGGAATGTAGAATCAGCTCTTGAGCTATTCGATGGATTGCCTGTAAAAGATATGGTGGCATGGACAGCAATGGTCTCGGGCTATGCGCAAAATGGTAGGCCGAGAGAAGCAATTGATTTTTTTAATAAAATGCAGGATGAAGGTGTGGAGACAGATGAAGTCACGCTCGTTGGTGTAATATCAGCCTGCGCACAATTAGGAGCAACTAAGTATGCAAAATGGGTGAGGGATATTGCAGTGAAATCAGGATTTCATCCGTCTGAAAATGTGGTTATAGGATCTGCACTAATTGATATGTACTCAAAATGTGGAAGTGTAGAGGAGGCCTACCAAGTTTTTGAAGGGATAAAGGAGAAGAACGTGTACTCGTATAGCTCCATGATTGTGGGGTATGCAGTCCATGGACGTCCTCATTTGGCTCTGCAATTATTTCACGAAATGTTGAAGACGGAAATAAAGCCCAACAAGGTAACTTTTGTAGGGGTTCTCACTGCCTGCAGCCATGCGGGTCTGGTAGAACAAGGCCGGCAACTCTTTTCAAAGATGGAGAAATTTTTTGGAGTCTCTCCATCTGCAGATCATTATGCCTGCATGGTCGATCTACTTGGCCGAGCCGGTCGATTGGAAGAAGCAATTGAACTTGTTGAATCCATGCCAGTAGAACCCCATGGAGGGGTATGGGGAGCTGTGCTTGGAGCTTGTCGCATCCACGGAAATCACAAAATCGCTCAGATTGCTGCAAATCATTTGTTTGAGATTGAGCCAAATGGTCAAGGAAATTACATTTTGCTATCTCACATATATTCATCAGCAGGAAGATGGGAGGACGTCTCCAAAGTGAGAAAACTAATGCGAGAAAAGGGTCTGAAAAAGAACCCAGGATGCAGCTGGGTGGAAGGAGAGAAGGGAGAAATTCACGAATTCGTTGCGGGCGACATGACTCATACAAAATCGAGCGAGATAAAGTGGGCATTGGAGGATCTTCTGAAAAGATTAAAGGATGATGGCTACAAACCAAACTTAAATTGTATTGTTTATGACGTGAGTGACGAAGAAAAGAAACGATTATTAATGTTTCACAGTGAAAAGCTTGCACTAGCCTATGGGCTTTTGACTACAGTGGCTGGTTGCACCATAAAGATAATGAAGAACCTAAGAATATGCGACGATTGCCATGAGGTGATGCGTGGTGCGTCTCTGCTCACGGGAAGGGAGATCATCGTCAGAGATAATACGAGATTTCACCACTTTGTAAAGGGGGCATGTTCTTGTGGTAATTTTTGGTGA 1557 43.48 MRKQGTSPTSFTFSALFKASGAVLNVELGRQVHAQTILVGGFASDLYVGNTMIDMYVKCGFLECGRKVFDEMPDRDIISWTELIVAYSKNGNVESALELFDGLPVKDMVAWTAMVSGYAQNGRPREAIDFFNKMQDEGVETDEVTLVGVISACAQLGATKYAKWVRDIAVKSGFHPSENVVIGSALIDMYSKCGSVEEAYQVFEGIKEKNVYSYSSMIVGYAVHGRPHLALQLFHEMLKTEIKPNKVTFVGVLTACSHAGLVEQGRQLFSKMEKFFGVSPSADHYACMVDLLGRAGRLEEAIELVESMPVEPHGGVWGAVLGACRIHGNHKIAQIAANHLFEIEPNGQGNYILLSHIYSSAGRWEDVSKVRKLMREKGLKKNPGCSWVEGEKGEIHEFVAGDMTHTKSSEIKWALEDLLKRLKDDGYKPNLNCIVYDVSDEEKKRLLMFHSEKLALAYGLLTTVAGCTIKIMKNLRICDDCHEVMRGASLLTGREIIVRDNTRFHHFVKGACSCGNFW 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10415463 10417019 + Bma017319.1 Bma03g00979 79652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00979 518 Pfam DYW family of nucleic acid deaminases 426 518 IPR032867 GO:0008270
Bma03g00979 518 Pfam E motif 327 389 IPR046848 -
Bma03g00979 518 Gene3D Tetratricopeptide repeat domain 106 169 IPR011990 GO:0005515
Bma03g00979 518 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5 501 - -
Bma03g00979 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
Bma03g00979 518 Pfam PPR repeat family 209 257 IPR002885 -
Bma03g00979 518 Pfam PPR repeat family 106 154 IPR002885 -
Bma03g00979 518 Pfam E+ motif 395 422 IPR046849 -
Bma03g00979 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Bma03g00979 518 Pfam PPR repeat 277 308 IPR002885 -
Bma03g00979 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 45 79 IPR002885 -
Bma03g00979 518 PANTHER BNAC09G18050D PROTEIN 5 501 - -
Bma03g00979 518 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 209 IPR002885 -
Bma03g00979 518 Gene3D Tetratricopeptide repeat domain 179 420 IPR011990 GO:0005515
Bma03g00979 518 Gene3D Tetratricopeptide repeat domain 1 105 IPR011990 GO:0005515
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 109 142 IPR002885 -
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 50 77 IPR002885 -
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 78 103 IPR002885 -
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 185 211 IPR002885 -
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 285 308 IPR002885 -
Bma03g00979 518 TIGRFAM PPR: pentatricopeptide repeat domain 247 281 IPR002885 -
Bma03g00979 518 Pfam PPR repeat 50 76 IPR002885 -
Bma03g00979 518 Pfam PPR repeat 78 101 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00979 - - - qlo:115995414 855.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01355 Bma-Chr2:55976252 Bma03g00979 Bma-Chr3:10415463 2.43E-84 dispersed
Bma03g00979 Bma-Chr3:10415463 Bma06g00561 Bma-Chr6:29900782 4.16E-166 dispersed
Bma05g00189 Bma-Chr5:5234833 Bma03g00979 Bma-Chr3:10415463 2.03E-11 dispersed
Bma03g00979 Bma-Chr3:10415463 Bma15g00171 Bma-Chr15:1823277 1.04E-154 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1035 . . . . . . . . . Cmo16g00690 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01258 . . . . . . . Bma03g00979 . . . . Cma16g00633 . . . . Cpe14g00540 . . . . . . . Cla07g00830 . . . . . . Lsi07g00239 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012740 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00979 Bma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0