Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00982 ATGGATGTCGAGACAATTTTCCACATGAAAGGTGGAGTTGGTGAAACCAGCTACGCCAGAAACTCCTCCCTTCAGAAGAGGGCTTCAGATGTGGCAAAGCATATAGCTTTGGAGACAGTGCGAGACGTTTATTTCTCCCAAAACCCAGCAAGCTTCGGCATAGCTGATTTAGGGTGTTCTTCTGGACCGAACACCTTGTCCATGATCAAAGACATAATTGAGGTTGTTTGGGGAACAAGTTCAAATTTTTGTCAACCAACTCCAGAGTTTCGAGTGTACCTCAATGATCTTCCCACCAACGACTTCAATTCCATCTTCAAGGCTTTGCCTGATTTCTGTAGGGATCTTCAAAGGGAGAAGAATAATGGGCGTGTTCCAATTTTCATTGGAGGCTATCCTGGCTCCTTCTATGGCAGACTTTTTCCAAACAATTGCTTGCACTTTGTCTATTCATCCTACAGTTTGCACTGGCTCTCAAGGATTCCGGTGGGTCTTTATAATCAAGAACTAGGCGAGTGTATGAACAAAGGGTCGGTGTACATTTCTGAATCCAGTCCTCCATGGGTTTCTCAAGCCTACCTGAAGCAATTTCAGGAGGATTTCTCACTTTTTCTCAGATCAAGGGCGGAGGAACTCATAGTCGGCGGACGAATGGTGTTAATCTTGCTGGGAAGAAGAGACTCAGCTCATATCGACAGAGGCAATTCTGTCTTCTGGCGAGTTCTCACCCGCAGCTTTGAAACCTTAGTCTCAAAGGGAGAAATCGAGAGGGAGAAGCTGGATTCATACGACGTTCATTTTTACGCTCCAAGCAGAGAAGAAATAGAAGACGTAGTGAGAAAAGAGGGTTCATTCGGGTTAGATCTGCTGGAAAAGTGTGAAATTGAGAGGACCGCCGTGAAGGGCGGGGAGAGCTACGGGACGGCCGTGGCAATGGCTGTGAGGGCCATCCAAGAGTCGATGATCAGCCACCATTTCGGAGAAGAAATTTTAGACAGTCTGTTTGAGACTTACGCAAAGATTTTGGATGAAGAAATGTGCAAAGAAGAAATAAAAGCCATCTCTCTGGTTCTTGTTCTTAGAAAGTTGTAA 1092 45.42 MDVETIFHMKGGVGETSYARNSSLQKRASDVAKHIALETVRDVYFSQNPASFGIADLGCSSGPNTLSMIKDIIEVVWGTSSNFCQPTPEFRVYLNDLPTNDFNSIFKALPDFCRDLQREKNNGRVPIFIGGYPGSFYGRLFPNNCLHFVYSSYSLHWLSRIPVGLYNQELGECMNKGSVYISESSPPWVSQAYLKQFQEDFSLFLRSRAEELIVGGRMVLILLGRRDSAHIDRGNSVFWRVLTRSFETLVSKGEIEREKLDSYDVHFYAPSREEIEDVVRKEGSFGLDLLEKCEIERTAVKGGESYGTAVAMAVRAIQESMISHHFGEEILDSLFETYAKILDEEMCKEEIKAISLVLVLRKL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10487711 10489076 + Bma017325.1 Bma03g00982 79655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00982 363 PANTHER OS01G0701700 PROTEIN 2 361 - -
Bma03g00982 363 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 2 361 IPR005299 GO:0008168
Bma03g00982 363 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1 362 IPR029063 -
Bma03g00982 363 Pfam SAM dependent carboxyl methyltransferase 39 362 IPR005299 GO:0008168
Bma03g00982 363 Gene3D Vaccinia Virus protein VP39 21 296 IPR029063 -
Bma03g00982 363 Gene3D - 6 349 IPR042086 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00982 - - - qsu:111988178 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00982 Bma-Chr3:10487711 Bma09g00087 Bma-Chr9:2305771 3.25E-97 dispersed
Bma03g00982 Bma-Chr3:10487711 Bma09g00086 Bma-Chr9:2143985 1.91E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1022 Blo04g00907 . Bda04g00039 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme08g00872 . . . . . . Bma03g00982 . . . . . . . . . . . . . . . . . . . . . . . . . Csa06g03268 Chy02g00623 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006385 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 3 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00982 Bma_Chr03 FPKM 24.426186 27.590607 30.379862 32.141277 20.967312 19.834469 20.822882 29.355268 24.709579 26.479649