Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00985 ATGAAAGACGTGATGAAAGAAGCTCGAGCTAAACTCTTATGTGCAAAAGAAATGATTGAGAGGAAGAAGGAAGGAGTTGATACCTGTACCAAACCGCGTTTGAGATATGACATGAAAGACAAAGAAGGACGTGTAAGTACGATGCTTGATCAGTCCAACAATGGTGACAATGAGATAAAATTGTCAGTTACGGATAAAACAAAAATCGTCATAGAGACTGCTGAAGAAAATCAAGTTTCATTACGAGGAGAAAAACTTTCAATGGTGGCTAATAAATCTGCAGAGAATAAGCTTAGAAATTACATTGATGACCCAAGAGAATGGAAAGAAGGAGCAGGATTTTTCGAGGTGAAGCCGGATCATTCTAGAAAGGCTTCTGAGCTGGTGAAAAATGGAGATATAATGATTCATTTATCTGGAAGGACTGTAAAGACAGAGCAGGATATTGTCATTGAAGCACTGGAACAGCTTGGAGGAAATGACAAGAAAATTGAGACTGTCTTAAATGTTCACTTTGACAAGAAACAAACAGAAAAGGTAGGAGGAGAGATCGACTGGCAGGAGGGCAAAAAGATGAGATCACAAAAAGACACTGTGCTTAATTGTCAGACGGAGTATGAGCAGTCTAAAGTGACTATATGTAATTATGACCTTGAAGAAACTGAGAAAAAAAATAAAATTACTCAGCCATCAGTAGAGAAGAAGGGAATAAGAGGAGCTGATAAGTCTGTGAATTATGGAGTGCTGGTAGAAGTTAAACAAAAGGACAACAAAGGTGAAGCTGAGCAGACTAAGGCCCAGGTGAATGATGAGGAAAAAGGCAAAGTGATCAGTGAAAGAAAGGATAATGAGAATAAAATCAAGGAAAGCTGTAGGGTAAGGGAAAATGAATTGGGTGAAACGGTAGGTATCAAACATCTAGAAATGAAGGGAAAACTTAAAGGATCCTTTGAAAGGACCAAAGGTGAGAAAGGGCTGAAAAAAATTCCTCGGCAGAATGAAAAGGGAAGGACGGAAGAGATTCTTGGCCATTTAGTGACCGAGAAGAGATTACAAGATGATCTTCAAGAGGGAGATGATGTTAAACCACCAAAGAAAACTAGTGATATATTAGATGGAAAGACACACGAAGAAGATGAAGAAAATGGAAAGAAAGATATCCATGAAAGGTGTGAAAATATATTGACAACACATGGAAAACATTCCGAGGAAAAAGAGAGTAAAAAAGAACCTGAAGAGGTTGAGGACAGAGAATCTAGTCAAATGGGAGTTAAGGAAGCAGTTGAGCATGTTAAAATTGAAGTCACTATCGATAAAGTTGGCAATGAGTGTCGAAGAATGTTTGAAGATCTCGACCGAGGAGAATTGGTGAAATTTAATGGAATGCATGTTGGAACAGAGAGCTGTCAGAAGACTAAGAAAATAAAATCGACTGACGGAGCTCAGGTTCAAAAGGAAATGGGGCTTAACAAGATACGAACTGAAGTAAGTGAGGTGGATACTGAATACCAAGCGATGAAACAACATTGCGAGCGTGATCAATCCATAGAAAAAGTGGAAGCAACTCAAGGATGTCTTGGTTACAAAGAAAGTGGAGATAAAATCAGTGAATGCAAAACTAGTAACACACAGTTAGATGATGCTAGAATGATGCATCTTGATATTGATGAAAATGTCAATGCAGTCTATAGAGGCGAAGAAGAATTCAAACACCTAGAGTGCCAAGTGGGAACTGAAAATGTCAATGAATCACTTTCTGTTGATGGCAATGGAAGTATAACAGAGATGACCTTAAGCAGTGAGACTAAATATTGTAATCGAGAAGCAGACAAAGATGTAGCAATGGCCTCAAACTTAAAGCCCTCCAGCATTGGCTGTGAGTTGAAAGTACTTGGAGACAACTTAATTATAACAAAAGAAGCAAAATCACCTGCGGTGGAGGAGAGTGGAAATCAAGTAAAAGAAGTGGGCATTAGGACAGGACATCAACACTATGTAAAAGTGAAGAATACGTCCAAACTAGTCTCTTTTCATCAATACCAAGATAGTAAATATGATCATGAAAGGGGAGAACAGGGGAAGGCCTTGAACCTTGAACTAAACAAGGACAAATTTGTACCAACAGAAGTAGATAAAGAGAGGATTGAAAAAGGAAGTAAATGTGAAACAAATGCAAAGCCTACCTCAGAAAGGAAAGGTAGGAACCCGAATTTGGCTTCGATGGTCAATGCAGGTCGGTCCACGGCGAGGAGAGATGGAGAAAAAAACACTGAGAGGGTGAAAAGGCAACAGGTGCTTGAGAAAGATCGCCTTAGAAAGATGGAAGAAGAGAGGGAAAGGGAAAGAGAAAAGGACAGGATGATTGTTGACAGAACCACTCTTGAAGGCCGTAAAGCGGACATTGAAGTCCATGTAGAAAAGGGTGCAATGGAGAGAGCCATTGCTGATGCTCAACAAAGAGCAATGTTGGAGGCACGAGAAAGACTGGAAAAAGCATGTGCAGAGGCCAGGGAAAAGTCTTTAGCTGGAAAGGCTGTTTTGGAGGCGAGGGTTAGAGCAGAGCGTGCTGCTGTTGAGAGAGCGAATGTAGAGGCTAGAGAGCGTGCATTTGAAAAGGCAGTGGCTGAAAAATCTGTTTTTGAGTCAAGAGAACGAATAGAGAGATCTTTTTCTGACAAATTATCTGCCTCTTCGAGAAACACTGGAATAAGACAGAGCTCTTCATTTTCTGATACATCAGATATCCGAACTCAAAGCACATTCGAATCCAGTGGTTCAAGATACACTCATTCTTTAGCCCATGGTGAAATAAGAGTAGGTATTAAGGGTGAATCAGCTCAAAGGTGTAAAGCCAGGTTGGAGAGGCATAAAAGAATAGCTGAACGTGCAGCCAATGCTCTTGCAGAAAAGAATATGCGTGATCTTCTTGCTCAAAGAGAGCAACTGGAGAAAAGTAGGCTAGCAGAAACTCTGGATGCTGAGGTTAGGAGGTGGTCGAGTGGGAAGGAAGGAAACTTGCGTGCCCTGCTATCAACTCTGCAATATATCTTATGGCCTGATAGCGGTTGGCATCCGATTCCATTGACAGAAGTAATAACAACTGCTTCTGTAAAGAAAGCTTACAGGAAAGCCACTCTGTGTGTCCATCCTGACAAATTACAGCAAAGGGGTGCAAGTATTCAGCAGAAATACATCTGCGAAAAGGTCTTTGATCTTCTAAAGGAAGCTTGGAACAAGTTCTGCTCAGAAGAGCGGTAA 3258 40.61 MKDVMKEARAKLLCAKEMIERKKEGVDTCTKPRLRYDMKDKEGRVSTMLDQSNNGDNEIKLSVTDKTKIVIETAEENQVSLRGEKLSMVANKSAENKLRNYIDDPREWKEGAGFFEVKPDHSRKASELVKNGDIMIHLSGRTVKTEQDIVIEALEQLGGNDKKIETVLNVHFDKKQTEKVGGEIDWQEGKKMRSQKDTVLNCQTEYEQSKVTICNYDLEETEKKNKITQPSVEKKGIRGADKSVNYGVLVEVKQKDNKGEAEQTKAQVNDEEKGKVISERKDNENKIKESCRVRENELGETVGIKHLEMKGKLKGSFERTKGEKGLKKIPRQNEKGRTEEILGHLVTEKRLQDDLQEGDDVKPPKKTSDILDGKTHEEDEENGKKDIHERCENILTTHGKHSEEKESKKEPEEVEDRESSQMGVKEAVEHVKIEVTIDKVGNECRRMFEDLDRGELVKFNGMHVGTESCQKTKKIKSTDGAQVQKEMGLNKIRTEVSEVDTEYQAMKQHCERDQSIEKVEATQGCLGYKESGDKISECKTSNTQLDDARMMHLDIDENVNAVYRGEEEFKHLECQVGTENVNESLSVDGNGSITEMTLSSETKYCNREADKDVAMASNLKPSSIGCELKVLGDNLIITKEAKSPAVEESGNQVKEVGIRTGHQHYVKVKNTSKLVSFHQYQDSKYDHERGEQGKALNLELNKDKFVPTEVDKERIEKGSKCETNAKPTSERKGRNPNLASMVNAGRSTARRDGEKNTERVKRQQVLEKDRLRKMEEEREREREKDRMIVDRTTLEGRKADIEVHVEKGAMERAIADAQQRAMLEARERLEKACAEAREKSLAGKAVLEARVRAERAAVERANVEARERAFEKAVAEKSVFESRERIERSFSDKLSASSRNTGIRQSSSFSDTSDIRTQSTFESSGSRYTHSLAHGEIRVGIKGESAQRCKARLERHKRIAERAANALAEKNMRDLLAQREQLEKSRLAETLDAEVRRWSSGKEGNLRALLSTLQYILWPDSGWHPIPLTEVITTASVKKAYRKATLCVHPDKLQQRGASIQQKYICEKVFDLLKEAWNKFCSEER 1085
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10546960 10551259 - Bma017329.2 Bma03g00985 79658

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00985 1085 Coils Coil 764 786 - -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 748 764 - -
Bma03g00985 1085 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 5 1080 - -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 890 927 - -
Bma03g00985 1085 Coils Coil 815 839 - -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 893 927 - -
Bma03g00985 1085 Coils Coil 946 985 - -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 710 764 - -
Bma03g00985 1085 SUPERFAMILY Chaperone J-domain 925 1084 IPR036869 -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 730 744 - -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 710 729 - -
Bma03g00985 1085 Coils Coil 844 864 - -
Bma03g00985 1085 ProSiteProfiles dnaJ domain profile. 1021 1085 IPR001623 -
Bma03g00985 1085 MobiDBLite consensus disorder prediction 313 423 - -
Bma03g00985 1085 PANTHER AUXILIN, ISOFORM A 5 1080 - -
Bma03g00985 1085 Gene3D DnaJ domain 957 1085 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00985 - - - zju:107424685 617.461
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00985 Bma06g00115 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01518 Bma-Chr1:31431932 Bma03g00985 Bma-Chr3:10546960 4.26E-35 dispersed
Bma01g02328 Bma-Chr1:80780978 Bma03g00985 Bma-Chr3:10546960 1.35E-58 dispersed
Bma03g00985 Bma-Chr3:10546960 Bma15g00765 Bma-Chr15:15836979 8.14E-55 dispersed
Bma03g00985 Bma-Chr3:10546960 Bma06g00115 Bma-Chr6:1599957 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g999 Blo04g00910 Blo16g00053 . . Bpe15g00422 Bpe13g00437 . . . . . Cma07g00477 Car03g00673 Car07g00420 Sed14g1132 Cpe19g00817 Cpe10g00623 Bhi03g01324 Tan03g1999 Cmetu08g1509 . . . . Cla01g01920 . . . Clacu01g2027 Cmu01g1902 . . Cone12ag0778 Cone6ag1638 Cone9ag1558 Lsi01g00666 . . Cme08g00860 . . Bda11g01857 . . . Bma03g00985 Bma06g00115 . . Cmo07g00477 . . . . . . . . . . . . . . . . . . . . . Csa06g03256 Chy02g00633 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004571 1 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00985 Bma_Chr03 FPKM 23.366669 25.072863 0.209307 0.542635 0.0 0.0 0.0 0.0 0.0 0.0