Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00988 ATGGAAGTGGGTTATAATTCACAAAATAGGGAGTCTTCGTCCAAGCTGACTTCTACAGCCTTCGCTCAAACAGTCGAAGAAAAAACAAGCGATGAAACAATTCAACTTGGAGATACAGCTCCCAATCCTCCTCAAACCCTAGACCAGAATTACCTCACTTATCATCTTCATCACCACCATCATTTTCCTCACAGCCGACAATTGAATCCTTCTCCAGAAATTTCCGGCAAATACAGCAAAGATCCACACCCCAACCGCCCAGATCTGGGGCCAGCTCCTACTACTCCACTGCCCGAAAGATTGAACTCGACAACACCATCGCAACCTGGAGCTTCGACCAGTGTAACTATATCCTCTCCGGTTCGATATCGAGAATGTTTAAAGAACCATGCGGCGAGTATAGGCGGGTACGTTCTCGATGGATGCGGAGAATTCATGCCAAACGGAGAAGAAAACAGTAGAGATGGTTTGAAATGTGCGGCCTGCGATTGCCATCGTAACTTTCACCGGAAAGAGACAGACGGCGAGCCGCCAGTTCCTTCTTCGACGAACTGTTACTACCCCTACAGCTCGAACAACACCACCACACGAAGAAGCGATCAAAGAATGGTTCCTACACCTTCCCATCTCTACCACCAGGGACCACTCTCTCTCGGGCCATCGGCGCCGATGATGATGACCTTTGGAAGTTCCAGTGGAGCTGCAGCGGAGTCTTCAAGCGAAGATCTAGCTATGGGACATCAACCACAATCATCAAAAAAGCGGTTTCGGACAAAATTCACAAATGAACAGAAAGATAAGATGATGGAGTTCGCTGAAAAACTGGGATGGAAGATTCAGAAGCATGATGAAGAAGAGCTGCAGCAGTTCTGTACTGAAGCCGGCGTAAAGAGGCAGGTTTTCAAGGTATGGATGCATAACAACAAGCCAACCATAAAAAAACATCAAATGTAA 954 47.06 MEVGYNSQNRESSSKLTSTAFAQTVEEKTSDETIQLGDTAPNPPQTLDQNYLTYHLHHHHHFPHSRQLNPSPEISGKYSKDPHPNRPDLGPAPTTPLPERLNSTTPSQPGASTSVTISSPVRYRECLKNHAASIGGYVLDGCGEFMPNGEENSRDGLKCAACDCHRNFHRKETDGEPPVPSSTNCYYPYSSNNTTTRRSDQRMVPTPSHLYHQGPLSLGPSAPMMMTFGSSSGAAAESSSEDLAMGHQPQSSKKRFRTKFTNEQKDKMMEFAEKLGWKIQKHDEEELQQFCTEAGVKRQVFKVWMHNNKPTIKKHQM 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10644405 10645358 - Bma017330.1 Bma03g00988 79661

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00988 317 MobiDBLite consensus disorder prediction 97 116 - -
Bma03g00988 317 MobiDBLite consensus disorder prediction 1 116 - -
Bma03g00988 317 MobiDBLite consensus disorder prediction 1 52 - -
Bma03g00988 317 Pfam ZF-HD protein dimerisation region 121 173 IPR006456 -
Bma03g00988 317 Gene3D - 237 314 - -
Bma03g00988 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 57 315 - -
Bma03g00988 317 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 122 172 IPR006456 -
Bma03g00988 317 SUPERFAMILY Homeodomain-like 241 315 IPR009057 -
Bma03g00988 317 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 309 IPR006455 -
Bma03g00988 317 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 57 315 - -
Bma03g00988 317 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 123 172 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00988 - - - qsu:111998832 298.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00988 Bma06g00120 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00988 Bma-Chr3:10644405 Bma05g00124 Bma-Chr5:3902942 5.07E-61 dispersed
Bma01g02594 Bma-Chr1:83562057 Bma03g00988 Bma-Chr3:10644405 8.63E-59 transposed
Bma02g00421 Bma-Chr2:6385066 Bma03g00988 Bma-Chr3:10644405 4.20E-52 transposed
Bma09g00128 Bma-Chr9:3877661 Bma03g00988 Bma-Chr3:10644405 3.14E-56 transposed
Bma13g00147 Bma-Chr13:1565387 Bma03g00988 Bma-Chr3:10644405 7.67E-22 transposed
Bma01g00760 Bma-Chr1:6996925 Bma03g00988 Bma-Chr3:10644405 1.98E-54 wgd
Bma03g00988 Bma-Chr3:10644405 Bma06g00120 Bma-Chr6:1632572 9.58E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005348 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57051 PF04770 ZF-HD_dimer 1.10E-29 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00988 Bma_Chr03 FPKM 10.546817 11.521805 6.521098 6.8159 7.16547 7.034385 7.800195 9.211898 7.621169 8.815422