Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00992 ATGATTGGCGAGAACAAGACAAAAAATGAGTCTTCTGTCGATTCTCCGACATCGGTGCTGGAAGACGAGGATGTATGCAAGCAAGAAAATGAAGTCCAAGAAGATGGCGAGACCCATCCGGATGCAGCAAAGGGGAATTGCATTCTTATATCAAGAGAAATGGAAAAGGAGGAAGAAAACTTGTTTAAAGCTCGAATAGAGGAAGAAGAGGCAGAGCCGGGAAAGAAGTCTGTCACGTCACCACATCTGGACGAACATCAATTTACAAAGTTGGATGAGCTCTTGATTCAAACACAGTTATATTCAGAGTTTCTGCTGGAGAAAATGGACGACATTACATTTAATGGAGTGGAAAAGGAAAGCGAACTTGTTGAGAAGAAAAAGGGTCGTGGCTCTAAAAGAAAAGCCACTACAAACTACAATAACAGGAAAGCAAAGAGGGCAGTTGCAGCCATGCTCACTAGATCTCAAGAAGGTGAGAAGGATGAAGATATAAATCTTAAGGGACATAGGCTGAAAAACTCAAAATGCAAATTGTTGAAAGAGTTGAAATACTTATCTGTTGAGAATAAGTTACTATTAGCTGGGACACCACTGCAAAATAATCTGGCAGAGCTTTGGTCATTGTTGAACTTTATTTTGCCTGATGTTTTCTCATCCCATGAAGAATTTGAGTCATGGTTTGATCTCTCTGGAAAGTGCAACGGTGAAGACAGAGAAGAGTTACTAGAGAAGCAAAAGGGTCAGGTCGTTGCAAAATTACATTCAATATTGCGTCCATTTTTACTCCGAAGATTAAAATCTGATGTGGAAAACATGCTTCCTGGGAAAAAAGAGATCATAATTTATGCCAACTTAACAGAATATCAGAAGAATTTTCAAGATCATTTAATGAATAAGAGTTTGGAAGAATATCTCACTGAGATGTCATTCTGGTACTACATCATTTCAATAAAAAAGCTGAATAGTTTAGTTATTCAGCTTCGGAAGAATTGCAACCATCCTGACCTTTTAGAATCTTCTTTTGACAATTCATACAGATATCCACCAGTAGAGCAGAGAGTCGAACAATGTGGTAAATTTCATTTGCTGGACATATTGTTGGCACGGCTATTTGCTCGCAAGCATAAAGTCCTTATCTTCAGCCAATGGACTAAGATTTTGGACATCATGAATTACTATTTTAGTGAAAAAGGATTTGAAGTTTGTAGAATAGATGACAATGTCAAGCTAGATGAAAGGAGGAGACAAATTCAGGAGTTCAATGATGTCAACAGCAATTATAGAATTTTTCTTCTAAGCACTCGAGCAGGGGGACTGGGTATTTTTTGCCTGCAGACTTTTCCTAGCTCTTAA 1356 38.27 MIGENKTKNESSVDSPTSVLEDEDVCKQENEVQEDGETHPDAAKGNCILISREMEKEEENLFKARIEEEEAEPGKKSVTSPHLDEHQFTKLDELLIQTQLYSEFLLEKMDDITFNGVEKESELVEKKKGRGSKRKATTNYNNRKAKRAVAAMLTRSQEGEKDEDINLKGHRLKNSKCKLLKELKYLSVENKLLLAGTPLQNNLAELWSLLNFILPDVFSSHEEFESWFDLSGKCNGEDREELLEKQKGQVVAKLHSILRPFLLRRLKSDVENMLPGKKEIIIYANLTEYQKNFQDHLMNKSLEEYLTEMSFWYYIISIKKLNSLVIQLRKNCNHPDLLESSFDNSYRYPPVEQRVEQCGKFHLLDILLARLFARKHKVLIFSQWTKILDIMNYYFSEKGFEVCRIDDNVKLDERRRQIQEFNDVNSNYRIFLLSTRAGGLGIFCLQTFPSS 451
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10721657 10726056 - Bma017334.1 Bma03g00992 79665

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00992 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 442 IPR027417 -
Bma03g00992 451 CDD SF2_C_SNF 349 442 - -
Bma03g00992 451 MobiDBLite consensus disorder prediction 20 41 - -
Bma03g00992 451 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 168 442 - -
Bma03g00992 451 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 7 166 - -
Bma03g00992 451 Coils Coil 52 72 - -
Bma03g00992 451 Gene3D - 275 442 IPR027417 -
Bma03g00992 451 MobiDBLite consensus disorder prediction 1 18 - -
Bma03g00992 451 Gene3D - 169 274 IPR038718 -
Bma03g00992 451 MobiDBLite consensus disorder prediction 1 46 - -
Bma03g00992 451 Pfam SNF2-related domain 169 337 IPR000330 GO:0005524|GO:0140658
Bma03g00992 451 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 275 IPR027417 -
Bma03g00992 451 Pfam Helicase conserved C-terminal domain 364 442 IPR001650 -
Bma03g00992 451 PANTHER SNF2/RAD54 HELICASE FAMILY 168 442 - -
Bma03g00992 451 PANTHER SNF2/RAD54 HELICASE FAMILY 7 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00992 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 443.736
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00992 Bma06g00128 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00992 Bma-Chr3:10721657 Bma02g00859 Bma-Chr2:46252504 4.64E-59 dispersed
Bma03g00992 Bma-Chr3:10721657 Bma06g00128 Bma-Chr6:1722979 7.39E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57053 PF00176 SNF2_N 1.60E-29 CL0023 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g00992 Bma_Chr03 FPKM 8.986941 9.179093 12.927192 13.758376 15.568001 14.48524 16.249807 16.822382 17.958504 17.849611