Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g00997 ATGAGTGCAAAAGTCAATCTGACAACCACCCCATCGTCGCCGGATAACATGTCCGATTGTGGTTCCAAAGAGCAGGACAGGTTTCTTCCCATTGCCAACGTTGGCCGTATCATGAAGAAATCTCTCCCCTCAAACGCTAAAATATCGAAGGAAGCCAAAGAAACCGTCCAGGAATGTGTTTCCGAGTTCATTAGCTTCATCACCGGAGAAGCTTCCGATAAGTGTGTTCGTGAGAAGAGGAAGACGATCAACGGAGATGATCTTTTGTGGGCCATGACCACTCTTGGTTTCGAAAATTACGTGGGACCCTTGAAAGTTTACCTCGGCAAGTACAAAGAAACTGAAGAAGAGGACTCTCTGCCAAAGTCCTCCTCAGTCCCCACCAAACCCTCGGATCCTTTGGCTTTTACAGCGAACATTGACCTTCAGAACTCTAATGGTAGAGTCATCACCTATGGAGACAACCCCAATAATATAGCTTTTAAGGTCAATAATGAAGATGCGAATGGGAGTAGAGCCACGGCGGCTCATCTTCATCATGGATCAGGCTGGTAA 555 46.67 MSAKVNLTTTPSSPDNMSDCGSKEQDRFLPIANVGRIMKKSLPSNAKISKEAKETVQECVSEFISFITGEASDKCVREKRKTINGDDLLWAMTTLGFENYVGPLKVYLGKYKETEEEDSLPKSSSVPTKPSDPLAFTANIDLQNSNGRVITYGDNPNNIAFKVNNEDANGSRATAAHLHHGSGW 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10874010 10874564 - Bma017341.1 Bma03g00997 79670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g00997 184 MobiDBLite consensus disorder prediction 1 19 - -
Bma03g00997 184 Gene3D Histone, subunit A 16 133 IPR009072 GO:0046982
Bma03g00997 184 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma03g00997 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Bma03g00997 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 11 127 - -
Bma03g00997 184 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Bma03g00997 184 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Bma03g00997 184 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Bma03g00997 184 SUPERFAMILY Histone-fold 25 120 IPR009072 GO:0046982
Bma03g00997 184 MobiDBLite consensus disorder prediction 1 23 - -
Bma03g00997 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 127 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00997 Bma-Chr3:10874010 Bma13g01113 Bma-Chr13:44263196 6.89E-55 dispersed
Bma03g00997 Bma-Chr3:10874010 Bma02g01299 Bma-Chr2:55150543 1.18E-58 transposed
Bma03g00997 Bma-Chr3:10874010 Bma12g00846 Bma-Chr12:39281855 2.31E-58 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57055 PF00808 CBFD_NFYB_HMF 8.60E-27 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g00997 K08065 - csv:101214273 203.371