Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g01004 | ATGGGTCGTGTAAAGCTACAGATTAAAAGGATTGAAAACAACACAAATCGACAAGTTACCTTCTCCAAACGTAGAAATGGACTCATTAAAAAGGCTTACGAGCTTTCCATCCTCTGTGATATTGACATTGCTCTCATCATGTTCTCCCACTCCGGCCGCCTCAGCCACTTCTCCGGCAAAAGAAGCGTTGAAGACGTCCTCGCACATTACATAAATCTGGCTGATCACGACCGGGGATGCGTCGTTCAAAATAAGGAGTATTTGTTAAGTACTCTGAACAAACTCAAGACAGAAAATGACATAGCCTTGCAACTAGCCAATCCATCGGCGGTGAACTCAAACGTCGAGGAGCTCCAGCAACAAATAGGCAATTTACAGCATCAGCTCCAAGTATCCGAGGAGCAGCTAAGAATGTTCGAGCCAGAACCCTTATCATTCACGTCAATAGACGGCCTTGAATCTTGCGAGAAGACCCTTTTGGATGCTTTGACGCGCATTACGCAGAGAAAGAAAGATCTCCTCAGCACCCATTTGTCCTCTTACGATCCATCCATTGTACAGATATACTTGGATACGCAAGAAGGAATACCCACGTCCTTTGAAAACGAGCTGGCTACTTGGTTACCAGAAGGCAATCAAAACGCAGCGCACATGTGCGTTCCATCCGAATCATCTTCCGTTCCTCCTCAAACCCACAGGGTCCAATACTCAAACGCAATCTACGATATTCCATGCAATATCGGAGGGTGTCATGTCGTGAACGACAACGACGAGAATGGGCTGCCGTCGTGGCACCATAACTACACTCCTTCTGAGCTTCTGTCTGCCTTCATTCCTCCTACCTCTTTTGCTTCTCTCAAGCGAGAGATGGCTGGACCCAGCATCGCATCAGACGGGAACCAAATCCCTCCAAGCGATGAGGTTGGAGAGTATCATGAACAGAATGCAGATTAA | 954 | 46.96 | MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSHSGRLSHFSGKRSVEDVLAHYINLADHDRGCVVQNKEYLLSTLNKLKTENDIALQLANPSAVNSNVEELQQQIGNLQHQLQVSEEQLRMFEPEPLSFTSIDGLESCEKTLLDALTRITQRKKDLLSTHLSSYDPSIVQIYLDTQEGIPTSFENELATWLPEGNQNAAHMCVPSESSSVPPQTHRVQYSNAIYDIPCNIGGCHVVNDNDENGLPSWHHNYTPSELLSAFIPPTSFASLKREMAGPSIASDGNQIPPSDEVGEYHEQNAD | 317 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 10970196 | 10973411 | + | Bma017348.1 | Bma03g01004 | 79677 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g01004 | 317 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | SUPERFAMILY | SRF-like | 2 | 82 | IPR036879 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | MobiDBLite | consensus disorder prediction | 289 | 317 | - | - | |
Bma03g01004 | 317 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 | 1 | 294 | - | - | |
Bma03g01004 | 317 | CDD | MADS_MEF2_like | 2 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Bma03g01004 | 317 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma03g01004 | 317 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 294 | - | - | |
Bma03g01004 | 317 | Coils | Coil | 115 | 135 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g00849 | Bma-Chr1:8023291 | Bma03g01004 | Bma-Chr3:10970196 | 5.59E-22 | dispersed | |
Bma03g01004 | Bma-Chr3:10970196 | Bma15g00150 | Bma-Chr15:1545160 | 6.49E-28 | dispersed | |
Bma03g01004 | Bma-Chr3:10970196 | Bma14g01652 | Bma-Chr14:35035905 | 2.95E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57057 | PF00319 | SRF-TF | 3.00E-25 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g01004 | - | - | qsu:112023587 | 407.142 |