Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01004 ATGGGTCGTGTAAAGCTACAGATTAAAAGGATTGAAAACAACACAAATCGACAAGTTACCTTCTCCAAACGTAGAAATGGACTCATTAAAAAGGCTTACGAGCTTTCCATCCTCTGTGATATTGACATTGCTCTCATCATGTTCTCCCACTCCGGCCGCCTCAGCCACTTCTCCGGCAAAAGAAGCGTTGAAGACGTCCTCGCACATTACATAAATCTGGCTGATCACGACCGGGGATGCGTCGTTCAAAATAAGGAGTATTTGTTAAGTACTCTGAACAAACTCAAGACAGAAAATGACATAGCCTTGCAACTAGCCAATCCATCGGCGGTGAACTCAAACGTCGAGGAGCTCCAGCAACAAATAGGCAATTTACAGCATCAGCTCCAAGTATCCGAGGAGCAGCTAAGAATGTTCGAGCCAGAACCCTTATCATTCACGTCAATAGACGGCCTTGAATCTTGCGAGAAGACCCTTTTGGATGCTTTGACGCGCATTACGCAGAGAAAGAAAGATCTCCTCAGCACCCATTTGTCCTCTTACGATCCATCCATTGTACAGATATACTTGGATACGCAAGAAGGAATACCCACGTCCTTTGAAAACGAGCTGGCTACTTGGTTACCAGAAGGCAATCAAAACGCAGCGCACATGTGCGTTCCATCCGAATCATCTTCCGTTCCTCCTCAAACCCACAGGGTCCAATACTCAAACGCAATCTACGATATTCCATGCAATATCGGAGGGTGTCATGTCGTGAACGACAACGACGAGAATGGGCTGCCGTCGTGGCACCATAACTACACTCCTTCTGAGCTTCTGTCTGCCTTCATTCCTCCTACCTCTTTTGCTTCTCTCAAGCGAGAGATGGCTGGACCCAGCATCGCATCAGACGGGAACCAAATCCCTCCAAGCGATGAGGTTGGAGAGTATCATGAACAGAATGCAGATTAA 954 46.96 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSHSGRLSHFSGKRSVEDVLAHYINLADHDRGCVVQNKEYLLSTLNKLKTENDIALQLANPSAVNSNVEELQQQIGNLQHQLQVSEEQLRMFEPEPLSFTSIDGLESCEKTLLDALTRITQRKKDLLSTHLSSYDPSIVQIYLDTQEGIPTSFENELATWLPEGNQNAAHMCVPSESSSVPPQTHRVQYSNAIYDIPCNIGGCHVVNDNDENGLPSWHHNYTPSELLSAFIPPTSFASLKREMAGPSIASDGNQIPPSDEVGEYHEQNAD 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10970196 10973411 + Bma017348.1 Bma03g01004 79677

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01004 317 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Bma03g01004 317 MobiDBLite consensus disorder prediction 289 317 - -
Bma03g01004 317 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 294 - -
Bma03g01004 317 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bma03g01004 317 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bma03g01004 317 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 294 - -
Bma03g01004 317 Coils Coil 115 135 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01004 - - - qsu:112023587 407.142
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00849 Bma-Chr1:8023291 Bma03g01004 Bma-Chr3:10970196 5.59E-22 dispersed
Bma03g01004 Bma-Chr3:10970196 Bma15g00150 Bma-Chr15:1545160 6.49E-28 dispersed
Bma03g01004 Bma-Chr3:10970196 Bma14g01652 Bma-Chr14:35035905 2.95E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
Bma08g00020 . 1 220 Type I MADS-box Gene Family AT5G60440 50.9 7.5e-47 184.5
Bma14g01938 . 1 181 Type I MADS-box Gene Family AT5G48670 59.7 8.0e-55 211.1
Bma15g00363 . 1 157 Type I MADS-box Gene Family AT5G48670 64.3 1.5e-53 206.8
Bma01g00881 . 1 155 Type I MADS-box Gene Family AT5G48670 63.5 3.5e-50 195.7
Bma02g00290 . 1 160 Type I MADS-box Gene Family AT5G48670 62.1 3.5e-50 195.7
Bma03g01004 . 1 222 Type I MADS-box Gene Family AT1G77950 51.1 1.7e-52 203.0
Bma03g01004 . 1 218 Type I MADS-box Gene Family AT1G77980 56.7 2.0e-61 233.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008266 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 3 1 1 1 1 1 1 1 0 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57057 PF00319 SRF-TF 3.00E-25 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01004 Bma_Chr03 FPKM 9.158975 9.977924 6.472683 4.841478 4.224037 4.054218 7.324382 5.684555 5.70522 6.506431