Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01004 ATGGGTCGTGTAAAGCTACAGATTAAAAGGATTGAAAACAACACAAATCGACAAGTTACCTTCTCCAAACGTAGAAATGGACTCATTAAAAAGGCTTACGAGCTTTCCATCCTCTGTGATATTGACATTGCTCTCATCATGTTCTCCCACTCCGGCCGCCTCAGCCACTTCTCCGGCAAAAGAAGCGTTGAAGACGTCCTCGCACATTACATAAATCTGGCTGATCACGACCGGGGATGCGTCGTTCAAAATAAGGAGTATTTGTTAAGTACTCTGAACAAACTCAAGACAGAAAATGACATAGCCTTGCAACTAGCCAATCCATCGGCGGTGAACTCAAACGTCGAGGAGCTCCAGCAACAAATAGGCAATTTACAGCATCAGCTCCAAGTATCCGAGGAGCAGCTAAGAATGTTCGAGCCAGAACCCTTATCATTCACGTCAATAGACGGCCTTGAATCTTGCGAGAAGACCCTTTTGGATGCTTTGACGCGCATTACGCAGAGAAAGAAAGATCTCCTCAGCACCCATTTGTCCTCTTACGATCCATCCATTGTACAGATATACTTGGATACGCAAGAAGGAATACCCACGTCCTTTGAAAACGAGCTGGCTACTTGGTTACCAGAAGGCAATCAAAACGCAGCGCACATGTGCGTTCCATCCGAATCATCTTCCGTTCCTCCTCAAACCCACAGGGTCCAATACTCAAACGCAATCTACGATATTCCATGCAATATCGGAGGGTGTCATGTCGTGAACGACAACGACGAGAATGGGCTGCCGTCGTGGCACCATAACTACACTCCTTCTGAGCTTCTGTCTGCCTTCATTCCTCCTACCTCTTTTGCTTCTCTCAAGCGAGAGATGGCTGGACCCAGCATCGCATCAGACGGGAACCAAATCCCTCCAAGCGATGAGGTTGGAGAGTATCATGAACAGAATGCAGATTAA 954 46.96 MGRVKLQIKRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSHSGRLSHFSGKRSVEDVLAHYINLADHDRGCVVQNKEYLLSTLNKLKTENDIALQLANPSAVNSNVEELQQQIGNLQHQLQVSEEQLRMFEPEPLSFTSIDGLESCEKTLLDALTRITQRKKDLLSTHLSSYDPSIVQIYLDTQEGIPTSFENELATWLPEGNQNAAHMCVPSESSSVPPQTHRVQYSNAIYDIPCNIGGCHVVNDNDENGLPSWHHNYTPSELLSAFIPPTSFASLKREMAGPSIASDGNQIPPSDEVGEYHEQNAD 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 10970196 10973411 + Bma017348.1 Bma03g01004 79677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01004 317 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Bma03g01004 317 MobiDBLite consensus disorder prediction 289 317 - -
Bma03g01004 317 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 294 - -
Bma03g01004 317 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Bma03g01004 317 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Bma03g01004 317 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g01004 317 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 294 - -
Bma03g01004 317 Coils Coil 115 135 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00849 Bma-Chr1:8023291 Bma03g01004 Bma-Chr3:10970196 5.59E-22 dispersed
Bma03g01004 Bma-Chr3:10970196 Bma15g00150 Bma-Chr15:1545160 6.49E-28 dispersed
Bma03g01004 Bma-Chr3:10970196 Bma14g01652 Bma-Chr14:35035905 2.95E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57057 PF00319 SRF-TF 3.00E-25 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01004 - - qsu:112023587 407.142