Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g01005 | ATGGCGACAGCTATAGATTATTACAGTGAAAGCGGCCAAGCAGTTTTCTCGGCGGATCCTTTGAGCGAAGAACTGATGAAAGCACTTGAACCTTTTATGAAAAGTGCTTCAACCTCTAATTTATCCCCTGCCTTTTCTTCTCATATTGGCTCTCCAACAAATTTACGCCCTGATCTAACGAGTACTGTTCAGAAAACAGGTTCGCTAAGACTGAACAAGCTGACCCCTTGTCAGATTCTTCAAATTCAAAACCAAATCCAGCTTCAGCAACCTTTGGGCGGCACCTCTTCCCGAAGGTTGCAGAGCTCCGGCAAGAACATGGCTGGTGGTGGAAAGAGCTGTAAGGTGTACAGGGGAGTGAGGCAGAGGCACTGGGGGAAATGGGTCGCCGAGATTAGACTCCCCAAGAACCGGACCCGCATCTGGCTTGGCACTTTCGACACTGCCGATGAAGCAGCTCTGGCGTATGATAAAGCTGCTTTTAAGCTCAGAGGCGAGTTTGCTCGCCTTAATTTTCCTCATCTCCCTCATCGCTCAGGCGATTATAGCCCCCTCCATTCCTCGGTGGAGGCCAAGCTTCAAGCTATATGTCAAACCTTGAAACCCTCCTCTGACGATGATCGGAAGCCAAATATCTTACCTCCTCCCGGCGCTAAAATGGTTTTCGACTGTTGCTCAGAATCTGACAACTTTTCAACCGAGTCCGGAAACACGATCCTCGAATTCAAGGAATCTACGTGGGACGAAACAGAGGTCTTTGCGTTGGACAAATTTCCTTCTCTTGAGAGTTGA | 792 | 48.61 | MATAIDYYSESGQAVFSADPLSEELMKALEPFMKSASTSNLSPAFSSHIGSPTNLRPDLTSTVQKTGSLRLNKLTPCQILQIQNQIQLQQPLGGTSSRRLQSSGKNMAGGGKSCKVYRGVRQRHWGKWVAEIRLPKNRTRIWLGTFDTADEAALAYDKAAFKLRGEFARLNFPHLPHRSGDYSPLHSSVEAKLQAICQTLKPSSDDDRKPNILPPPGAKMVFDCCSESDNFSTESGNTILEFKESTWDETEVFALDKFPSLES | 263 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 11038397 | 11039188 | + | Bma017351.1 | Bma03g01005 | 79678 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g01005 | 263 | Gene3D | AP2/ERF domain | 116 | 174 | IPR036955 | GO:0003700|GO:0006355 | |
Bma03g01005 | 263 | ProSiteProfiles | AP2/ERF domain profile. | 116 | 173 | IPR001471 | GO:0003700|GO:0006355 | |
Bma03g01005 | 263 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 | 1 | 262 | - | - | |
Bma03g01005 | 263 | CDD | AP2 | 117 | 175 | IPR001471 | GO:0003700|GO:0006355 | |
Bma03g01005 | 263 | MobiDBLite | consensus disorder prediction | 91 | 113 | - | - | |
Bma03g01005 | 263 | MobiDBLite | consensus disorder prediction | 91 | 108 | - | - | |
Bma03g01005 | 263 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 | 1 | 262 | - | - | |
Bma03g01005 | 263 | Pfam | AP2 domain | 116 | 166 | IPR001471 | GO:0003700|GO:0006355 | |
Bma03g01005 | 263 | SUPERFAMILY | DNA-binding domain | 116 | 174 | IPR016177 | GO:0003677 | |
Bma03g01005 | 263 | SMART | rav1_2 | 116 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Bma03g01005 | 263 | PRINTS | Ethylene responsive element binding protein signature | 117 | 128 | IPR001471 | GO:0003700|GO:0006355 | |
Bma03g01005 | 263 | PRINTS | Ethylene responsive element binding protein signature | 139 | 155 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g02621 | Bma-Chr1:83780233 | Bma03g01005 | Bma-Chr3:11038397 | 2.67E-50 | dispersed | |
Bma03g01005 | Bma-Chr3:11038397 | Bma15g01036 | Bma-Chr15:41516200 | 4.21E-67 | dispersed | |
Bma03g01005 | Bma-Chr3:11038397 | Bma01g01424 | Bma-Chr1:24099779 | 1.61E-54 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57058 | PF00847 | AP2 | 4.50E-15 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g01005 | K09286 | - | tcc:18611594 | 223.787 |