Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01005 ATGGCGACAGCTATAGATTATTACAGTGAAAGCGGCCAAGCAGTTTTCTCGGCGGATCCTTTGAGCGAAGAACTGATGAAAGCACTTGAACCTTTTATGAAAAGTGCTTCAACCTCTAATTTATCCCCTGCCTTTTCTTCTCATATTGGCTCTCCAACAAATTTACGCCCTGATCTAACGAGTACTGTTCAGAAAACAGGTTCGCTAAGACTGAACAAGCTGACCCCTTGTCAGATTCTTCAAATTCAAAACCAAATCCAGCTTCAGCAACCTTTGGGCGGCACCTCTTCCCGAAGGTTGCAGAGCTCCGGCAAGAACATGGCTGGTGGTGGAAAGAGCTGTAAGGTGTACAGGGGAGTGAGGCAGAGGCACTGGGGGAAATGGGTCGCCGAGATTAGACTCCCCAAGAACCGGACCCGCATCTGGCTTGGCACTTTCGACACTGCCGATGAAGCAGCTCTGGCGTATGATAAAGCTGCTTTTAAGCTCAGAGGCGAGTTTGCTCGCCTTAATTTTCCTCATCTCCCTCATCGCTCAGGCGATTATAGCCCCCTCCATTCCTCGGTGGAGGCCAAGCTTCAAGCTATATGTCAAACCTTGAAACCCTCCTCTGACGATGATCGGAAGCCAAATATCTTACCTCCTCCCGGCGCTAAAATGGTTTTCGACTGTTGCTCAGAATCTGACAACTTTTCAACCGAGTCCGGAAACACGATCCTCGAATTCAAGGAATCTACGTGGGACGAAACAGAGGTCTTTGCGTTGGACAAATTTCCTTCTCTTGAGAGTTGA 792 48.61 MATAIDYYSESGQAVFSADPLSEELMKALEPFMKSASTSNLSPAFSSHIGSPTNLRPDLTSTVQKTGSLRLNKLTPCQILQIQNQIQLQQPLGGTSSRRLQSSGKNMAGGGKSCKVYRGVRQRHWGKWVAEIRLPKNRTRIWLGTFDTADEAALAYDKAAFKLRGEFARLNFPHLPHRSGDYSPLHSSVEAKLQAICQTLKPSSDDDRKPNILPPPGAKMVFDCCSESDNFSTESGNTILEFKESTWDETEVFALDKFPSLES 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11038397 11039188 + Bma017351.1 Bma03g01005 79678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01005 263 Gene3D AP2/ERF domain 116 174 IPR036955 GO:0003700|GO:0006355
Bma03g01005 263 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Bma03g01005 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 262 - -
Bma03g01005 263 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Bma03g01005 263 MobiDBLite consensus disorder prediction 91 113 - -
Bma03g01005 263 MobiDBLite consensus disorder prediction 91 108 - -
Bma03g01005 263 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-4 1 262 - -
Bma03g01005 263 Pfam AP2 domain 116 166 IPR001471 GO:0003700|GO:0006355
Bma03g01005 263 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Bma03g01005 263 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Bma03g01005 263 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Bma03g01005 263 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02621 Bma-Chr1:83780233 Bma03g01005 Bma-Chr3:11038397 2.67E-50 dispersed
Bma03g01005 Bma-Chr3:11038397 Bma15g01036 Bma-Chr15:41516200 4.21E-67 dispersed
Bma03g01005 Bma-Chr3:11038397 Bma01g01424 Bma-Chr1:24099779 1.61E-54 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57058 PF00847 AP2 4.50E-15 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01005 K09286 - tcc:18611594 223.787