Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01017 ATGGCAATAAGACTACAGTTTGAGAATTCATGTGAAATCGGTGTATTTTCTAAGCTCACAAATGCTTATTGTTTGGTTGCTATTGGTGGCTCGGAGAACTTCTACAGCACTTTTGAAGCTGAATTAGCAGATGTGATCCCTGTTGTTAAGACCTCTATTGGAGGCACTCGTATTATCGGTCGTCTTTGTGCTGGTAATAAAAATGGACTTCTTGTGCCCCATACAACCACCGATCAAGGAGCTAATCACCTAATATATGAACCTGGGTTCTTCAAAGCATTACGGATAAATATTTCTATTAACACTAAAATTACTTTTGTTGTATTGTTTAAAGAACTTCAGCATTTGAGGAACAGTTTACCTGATCAAGTAGTCGTTCAGCGTGTGGATGAGAGGCTATCAGCTCTGGGAAATTGTATTGCATGCAATGACCATGTTGCTCTGACACACATTGACCTTGACAAGGAAACTGAAGAAATGATTGCTGATGTTCTTGGAGTGGAAGTGTTTAGGCAGAGTGTAGCTGGTAATATCCTTGTCGGAAGTTACTGTGTCTTCTCGAACAGAGGTGGCCTTGTTCATCCCCATACATCAATTGAAGATCTGGATGAACTCTCGACCCTTCTTCAGGTCCCCTTGGTAGCCGGCACCGTCAACCGTGGCAGTGAAGTGATTGGTGCTGGCATCACCGTAAATGATTGGACCGCATTTTGTGGATCCGACACTACGGCAACAGAGCTCTCCGTCATCGAGAGCGTTTTCAAGTTGAGAGAAGCCCAGCCAAATGCCATAGCCGACGAAATGAGAAAATCGCTCATAGACAGCTATGTTTAA 834 43.17 MAIRLQFENSCEIGVFSKLTNAYCLVAIGGSENFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLVPHTTTDQGANHLIYEPGFFKALRINISINTKITFVVLFKELQHLRNSLPDQVVVQRVDERLSALGNCIACNDHVALTHIDLDKETEEMIADVLGVEVFRQSVAGNILVGSYCVFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGITVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIADEMRKSLIDSYV 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11287455 11292021 + Bma031011 Bma03g01017 79690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01017 277 PIRSF Transl_init_IF-6 1 107 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 PIRSF Transl_init_IF-6 103 258 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 111 277 - -
Bma03g01017 277 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 84 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 TIGRFAM eIF-6: putative translation initiation factor eIF-6 99 256 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 SUPERFAMILY Pentein 107 256 - -
Bma03g01017 277 CDD IF6 2 255 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 84 - -
Bma03g01017 277 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 111 277 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 Gene3D - 1 102 - -
Bma03g01017 277 Gene3D - 103 257 - -
Bma03g01017 277 SUPERFAMILY Pentein 1 85 - -
Bma03g01017 277 Pfam eIF-6 family 4 84 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 Pfam eIF-6 family 110 235 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 Hamap Translation initiation factor 6 [eif6]. 1 277 IPR002769 GO:0042256|GO:0043022
Bma03g01017 277 SMART eIF6neu2 3 236 IPR002769 GO:0042256|GO:0043022
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01017 Bma06g00495 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01017 Bma-Chr3:11287455 Bma06g00495 Bma-Chr6:23638558 8.29E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01017 K03264 - ming:122066887 449.129