Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01018 ATGCGTGCCGTCCTTGGATTTTCCAAAAATTGTGTACTTTTGTCTTCTCTATGTGGTTCTTATCGATATGGTTCAGTTAAAGCTGTACACGTCTTTCGTCAGTATGAGGAAAAAAGGCCCAGAAAAATGTTAAGTGGAAAGGTGAAGAAATCAGATAAATTTATTGAGATGAAAGCTGCAGATCCAAAGGTTTACATGAGGGACATCATCAATAGCATATACAATGTTCTGAGAAATTCCACTTGGGATCATGCTCAAGGGCATCTAGAAAAGCTTCCTATAAGATGGGATTCTTATACAATCAATCAGGTTTTGAAAACTCATCCACCAATGGAAAAGGCTTGGTTATTTTTTAATTGGGCTTCATCTCGAAAAGGGTTCAAGCACGATCACTTTACATACACCACAATGCTGGACATATTTGGTGAAGCTGGGAGAATTTCATCCATGAACCATTTATTTGTAGAAATGCAGGAGAAGGAGATTAAAATTGATGCTGTTACTTATACTTCGATGATGCATTGGCTTTCAAGTTCTGGTGATGTTGAGGGGGCGATAAAGCTTTGGGATGAAATGAAAACCAAAGATTGCTCCCCTACTTTGGTTTCGTATACTGCTTTTATGAAGATTCTGTTTGATAATGGCAGAGCTGAGGAAGCCATTAATGTGTACGAGGAGATGCTTCAGTTTGGTCTTTCTCCCAATTGCCATACATACACTGTTTTAATGGATTTTCTTATGGAGTCCGGAAAATACGAAAAAGCTCTTGAAATTTTATATCAAATGCAAGAAGCTGAAGTTCTTCCTGATAAAGCTGCTTGCAATATTTTGATTCAGAAATGTTCTAAGGCTGGGCAAGCACATGTAATTACTAAAATCCTCGAGTACATGAAAGAAAATCGCCTGGTTCTACGATACCCTGTTTTTCTTGAGGCATTTGAAACTTTGAAATCTTTTAGTCATGGCAATGCTCTTCTCAGGGAGGTCAATCCTCATATTTCGACTGAATCTTTCAGCAAGGAGTTGATTGTTTCATTAACAACAAATACTTCTGCTACTCCTTTTATACTAGAGGGTGGTTTAATGTCTATTCTTTTGAGAAAGGAAAATCTTATTGCTGTTGATCGTCTACTCGCTGGGTTGATAGACGAAGGTGTAAAATTGGATGCCTCACTCATCTCAACTGTAATTGATGTGAATTGCAGTCGTAATAGACCTGATGGTGTTTTATTGGCCTTCGAGTACTGTTTAAAAATGGGTGTGATTCTTCAGAGAAATGGATATCTTAATTTAATAGGATTTTTGATCAGATCAAATTTATTTTCAAAGGTGTTGAAGGTAGTTGAGGAAATGGTTAGGGGTGGATATTCTCTTGAAATATATTTTGCTGCGCTTTTAATCTATAAACTTGGCAAGGCTAGAAGGACCTCTTGTGCAGTGAAAGTTTTTAATCTTTTGCCTGATGAACACAAGTGTTCTCCAACATACACTGCTCTGATTAGTGCTTACTTCTGTGCTGGCAGTGTTGACAAAGCACTTCAAATTTGGAAAACTATGAAGGAAAAAGGGATTGCTCCTTCTTTAGGAACAAATGCAGTGATACTGGCTGGTCTTCGAAATAGTAAAAGAGTGTGTGAAACAGAAATTTATAGGAAGGAGATAAACAACTCCCAGATTGACTGCAAATCTCAGGCTATGAGACCCACATCGGAGAAGATCTGTGATCTTCTGTTCGGTGGAAGTTTGGTATCTCAATTCATTCTGTAG 1767 37.8 MRAVLGFSKNCVLLSSLCGSYRYGSVKAVHVFRQYEEKRPRKMLSGKVKKSDKFIEMKAADPKVYMRDIINSIYNVLRNSTWDHAQGHLEKLPIRWDSYTINQVLKTHPPMEKAWLFFNWASSRKGFKHDHFTYTTMLDIFGEAGRISSMNHLFVEMQEKEIKIDAVTYTSMMHWLSSSGDVEGAIKLWDEMKTKDCSPTLVSYTAFMKILFDNGRAEEAINVYEEMLQFGLSPNCHTYTVLMDFLMESGKYEKALEILYQMQEAEVLPDKAACNILIQKCSKAGQAHVITKILEYMKENRLVLRYPVFLEAFETLKSFSHGNALLREVNPHISTESFSKELIVSLTTNTSATPFILEGGLMSILLRKENLIAVDRLLAGLIDEGVKLDASLISTVIDVNCSRNRPDGVLLAFEYCLKMGVILQRNGYLNLIGFLIRSNLFSKVLKVVEEMVRGGYSLEIYFAALLIYKLGKARRTSCAVKVFNLLPDEHKCSPTYTALISAYFCAGSVDKALQIWKTMKEKGIAPSLGTNAVILAGLRNSKRVCETEIYRKEINNSQIDCKSQAMRPTSEKICDLLFGGSLVSQFIL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11295011 11297954 + Bma017367.1 Bma03g01018 79691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01018 588 SUPERFAMILY TPR-like 62 317 IPR011990 GO:0005515
Bma03g01018 588 TIGRFAM PPR: pentatricopeptide repeat domain 495 527 IPR002885 -
Bma03g01018 588 TIGRFAM PPR: pentatricopeptide repeat domain 167 200 IPR002885 -
Bma03g01018 588 TIGRFAM PPR: pentatricopeptide repeat domain 237 270 IPR002885 -
Bma03g01018 588 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Bma03g01018 588 TIGRFAM PPR: pentatricopeptide repeat domain 132 166 IPR002885 -
Bma03g01018 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Bma03g01018 588 Pfam PPR repeat 273 301 IPR002885 -
Bma03g01018 588 Gene3D Tetratricopeptide repeat domain 356 465 IPR011990 GO:0005515
Bma03g01018 588 PANTHER OS10G0358700 PROTEIN 52 582 - -
Bma03g01018 588 Gene3D Tetratricopeptide repeat domain 71 231 IPR011990 GO:0005515
Bma03g01018 588 Gene3D Tetratricopeptide repeat domain 466 575 IPR011990 GO:0005515
Bma03g01018 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Bma03g01018 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Bma03g01018 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Bma03g01018 588 Pfam PPR repeat family 199 244 IPR002885 -
Bma03g01018 588 Pfam PPR repeat family 493 538 IPR002885 -
Bma03g01018 588 Pfam PPR repeat family 130 176 IPR002885 -
Bma03g01018 588 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 52 582 - -
Bma03g01018 588 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Bma03g01018 588 Gene3D Tetratricopeptide repeat domain 232 302 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01018 - - - hbr:110669976 674.855
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01018 Bma-Chr3:11295011 Bma15g01075 Bma-Chr15:43059172 4.35E-07 dispersed
Bma03g01018 Bma-Chr3:11295011 Bma05g01007 Bma-Chr5:48538911 2.05E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g913 Blo04g00953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01018 . Sed01g0084 . . . . . . . . Bhi10g02231 Tan07g1031 Cmetu11g0453 . Hepe10g0832 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010326 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01018 Bma_Chr03 FPKM 2.766343 3.865515 4.595015 5.371175 10.893806 9.922238 11.005166 3.60921 2.845842 3.401464