Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01020 ATGCCCGTCGAATTGCCGAGGGGTTTACCTTTCTCGGTTGATACATGGACCCGATCTTCTATGGAGAAGAGGCATCATTTCCTAACCCATGCCCACAGAGACCATTCTGTCGGAATCGCCACCCACTGTTCTTTTCCGATTTATTGTACCCATCTCACTAAAGTCCTCCTCTGTCGTCAATTTCGTCAGCTCGATGATTCTTTATTTGTTTGTGTAGAAGTGGGCCAGACGGCTGTCCTTAAAGATCCCGATGGAGATTTCTCTGTGACAGTTTTTGATGCAAATCACTGTGCTGGAGCTGTAATGTTCTTGTTAGAAGGGAATTTCGGCAATATCCTCCACACCGGAGATTGCAGGCTGACACCTGAGTGCCTTCAAAATTTACCCGATAAATATCGTGGTAAACATGGAAAAGAGCCAAAATGCCAACTTAATTTTCTTTTCCTAGATTGTACATTTGGTAAATGCTATCAAGATTTTCCCAGCATGCATTCTGCAATCCGTCAGGTTATTAAATGTATATGGAATCATCCTGATGCCCCTGTTGTGTATCTGAACTGCAATCTTCTTGGACAAGAAGACATACTAAGACAAGTGTCCTCAACATTTGGATCTAAGATATTTGTCGACGCATCGACAAATCCTGAATGTTTTCAAGTCCTGTCAATTACAGTTCCTGAAGTTCTCTGTGAAGATTCATCTTCTCGCTTTCATTTTCTATATGGGTTTCCAATAATAGGTGTTAAAACAATGCTCAAAGATCGTCAATCTAAGTTACTGCCTAAGCCTCTCATTATCCGCCCTTCTACACAGTGGTATGTTCACGAAGAAGGTTTTAAAGACGTGGGTCGGAATAGAAAACAGATCATTAGTGAAGCAATAAGGGATGCTTCTGGTGTTTGGCATGTTTGTTACTCAATGCACTCGTCAAAAGACGAGCTAGAATGGGCACTTCAAGTTCTAGCCCCTAAATGGGTAGTTTCAACAACCCCCAATTGCCGTGCATTGGAGCTGGATTATGTCAAGAAGCATCCAGCCAGCTCAAAGTTGGTTTCGGACGATCCCTTGTGGACGCTACTTGGTGTTAACTCAGAAACTTCAAATGAAACTGGATATGATGAAGATTTAGGTTGTTCTCTTGTGGCAGAGGAGCCCACTCAACAAGAGATCTACAACTCGCCTTCTAGTAAACCACCAATTGTGTTGTTCGGACGAGCTAGACATTGTACTGCAGATGCTAATGTGGAGCATGAAGAGAAAATTAGCAAAGATGCACAAGATGCTTACAAGAGTGTTGACTTCTACACCCACAAGGAGAACAAAGAGGGTAAGCATGATGAATCTTTGGGTGATGAGAGAGAAAGCGGGATTGTTAGAATGCGATGCAATAAAGTAGCCGAAAAGGAAGGAGTGGTTCATCGGGAAACCTTTTGCTTTTCAATGGGATCGTCAAATGGTTTTAATGAAAGGTTCAGAGAGTTGTACAGGTCAATGAATGTTCCAGTTCCTAAACCTCTTCCTTCCTTGGTGCAACTCATGAAATCCAGAAAAACTAGCAAGAGGAGATTTGAATTCTAG 1578 42.33 MPVELPRGLPFSVDTWTRSSMEKRHHFLTHAHRDHSVGIATHCSFPIYCTHLTKVLLCRQFRQLDDSLFVCVEVGQTAVLKDPDGDFSVTVFDANHCAGAVMFLLEGNFGNILHTGDCRLTPECLQNLPDKYRGKHGKEPKCQLNFLFLDCTFGKCYQDFPSMHSAIRQVIKCIWNHPDAPVVYLNCNLLGQEDILRQVSSTFGSKIFVDASTNPECFQVLSITVPEVLCEDSSSRFHFLYGFPIIGVKTMLKDRQSKLLPKPLIIRPSTQWYVHEEGFKDVGRNRKQIISEAIRDASGVWHVCYSMHSSKDELEWALQVLAPKWVVSTTPNCRALELDYVKKHPASSKLVSDDPLWTLLGVNSETSNETGYDEDLGCSLVAEEPTQQEIYNSPSSKPPIVLFGRARHCTADANVEHEEKISKDAQDAYKSVDFYTHKENKEGKHDESLGDERESGIVRMRCNKVAEKEGVVHRETFCFSMGSSNGFNERFRELYRSMNVPVPKPLPSLVQLMKSRKTSKRRFEF 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11336371 11338657 - Bma017368.1 Bma03g01020 79693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01020 525 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 449 523 - -
Bma03g01020 525 PANTHER DNA REPAIR METALLO-BETA-LACTAMASE FAMILY PROTEIN 449 523 - -
Bma03g01020 525 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 1 419 - -
Bma03g01020 525 Gene3D - 10 329 IPR036866 -
Bma03g01020 525 Pfam DNA repair metallo-beta-lactamase 229 333 IPR011084 -
Bma03g01020 525 Gene3D - 159 308 - -
Bma03g01020 525 SUPERFAMILY Metallo-hydrolase/oxidoreductase 25 332 IPR036866 -
Bma03g01020 525 PANTHER DNA REPAIR METALLO-BETA-LACTAMASE FAMILY PROTEIN 1 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01020 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - jre:108996087 597.045
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01020 Bma-Chr3:11336371 Bma12g00770 Bma-Chr12:34931672 1.75E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1302 . . . . Bpe15g00412 . . . Cmo02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01045 . . Bma03g01020 . . . . . . . . Cpe05g01059 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009621 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01020 Bma_Chr03 FPKM 18.120852 18.570395 4.553075 4.416328 32.725185 31.991695 30.781689 1.685488 1.667384 1.550192