Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01030 ATGTTTGCTCTGCCATGGAAAGAGGTATCGAAGTTTCCATGGTTGCTAGAAATGACGAGTAGTTTTAGTAGAAGTGCTTCGTTAAACAGGAATGCCTCTTTTAAACTGAGGGCTTTGAGCGTCGGAAGTCCGAGAATCAATCGCGGGAACGTGGTATCGCGCTTATGTATTTGGATTGTGGTGACTGGAGCTCTAATTTCATTTCTCATAGCTCTAACTGCTTGTTATTTTTATTCACTCCCTAATCTTACTTTTGCTTTCCACGGTTATGGCTTATACAAATCTAATTCTTCTGCAACTACCTGTGATGTCTATGACGGAAATTGGGTTGTGGATGAAAACTACCCATTGTACAATGCAGGAGAATGCCCTTTTGTAGAGAAAGGATTTGATTGTCTAAGTAATGGTAGAGGGGATGAGGATTATCTTAAATGGAGGTGGAAACCTATGAATTGTGATATTGGAAGGTTCAATGTACATCAAGTATTGGAAATGTTTAGAAACAAAAGGATTGTTTTCGTTGGAGATTCTATGAGTAGAACACAGTGGGAATCCCTTATTTGTCTTTTGATGAGTGGGGTGGAGGATAAGAAGAGTGTTTATGAAATAAATGGGAATCAAATTACTAAGCGGATAAGATTCTTGGGTGTTCGATTTAATTCATTTAATCTTACTGTTGAGTTCTATCGCTCTGTTTTTTTGGTGGAACATAATTGGTCTCTGAAGAATCAACCGAAGAGAGTGAAATCAGCTCTCAAACTGGACAAGCTTGATAGTATTAGCAGTGAGTGGATCGATTCAAATGTTCTCATATTCAACTCTGGACACTGGTGGGTCCCTGGGAAGCTTTTTGACACAGGCTGCTATTTCCAGGTTGGAAATTCTGTAAATCTTGGAATGCCAATTCACACAGCTTTCAGAATAGCACTTGAGACCTGGGCATCCTGGGTGGAACAAACAATTGACATTAACAAAACACGTGTTTTCTTTCGAACCTTTGAGCCATCTCATTGGAGTGGTCACACTTATCGAACTTGCAATGTAACCAGTCAACCAGCAGCAAAAACTTGGGGAAAAGAGGAAAGCATGTTTTCCAACATAATAATGGAGGTCGTAAAGAATATGACAGTTCCTACAAATGTTTTGGATATAACTCCGTTATCAGCTAAACGTACTGATGCACACGTTGGTCAATGGAGCGATAATCCAGCAGTACCAGATTGTAGCCACTGGTGTCTGCCAGGAGTGCCTGATACGTGGAATGAAATTTTACTCTTTTTCCTTTCCACTGGCCATTTGCATCCTTCTTAA 1311 40.05 MFALPWKEVSKFPWLLEMTSSFSRSASLNRNASFKLRALSVGSPRINRGNVVSRLCIWIVVTGALISFLIALTACYFYSLPNLTFAFHGYGLYKSNSSATTCDVYDGNWVVDENYPLYNAGECPFVEKGFDCLSNGRGDEDYLKWRWKPMNCDIGRFNVHQVLEMFRNKRIVFVGDSMSRTQWESLICLLMSGVEDKKSVYEINGNQITKRIRFLGVRFNSFNLTVEFYRSVFLVEHNWSLKNQPKRVKSALKLDKLDSISSEWIDSNVLIFNSGHWWVPGKLFDTGCYFQVGNSVNLGMPIHTAFRIALETWASWVEQTIDINKTRVFFRTFEPSHWSGHTYRTCNVTSQPAAKTWGKEESMFSNIIMEVVKNMTVPTNVLDITPLSAKRTDAHVGQWSDNPAVPDCSHWCLPGVPDTWNEILLFFLSTGHLHPS 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11837414 11840516 - Bma017384.1 Bma03g01030 79703

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01030 436 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 43 431 IPR029962 GO:0016413
Bma03g01030 436 PANTHER PROTEIN TRICHOME BEREFRINGENCE-LIKE 7 43 431 - -
Bma03g01030 436 Pfam PMR5 N terminal Domain 101 153 IPR025846 -
Bma03g01030 436 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 155 425 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01030 - - - rcu:8259144 597.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01030 Bma-Chr3:11837414 Bma09g00071 Bma-Chr9:1792539 4.29E-125 dispersed
Bma05g00665 Bma-Chr5:38916077 Bma03g01030 Bma-Chr3:11837414 8.97E-44 dispersed
Bma03g01030 Bma-Chr3:11837414 Bma13g00085 Bma-Chr13:920052 2.09E-95 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1281 Blo04g00965 . . . Bpe15g00402 . . . Cmo02g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01054 . . Bma03g01030 . . . . . . . . Cpe05g01063 . Bhi10g01666 . . . . . . Cla02g00060 Cam02g0061 Cec02g0063 Cco02g0056 Clacu02g0060 Cmu02g0059 Cre02g0399 Lsi10g00720 . . Cme11g00064
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010327 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01030 Bma_Chr03 FPKM 10.093834 9.108713 6.854867 6.937771 34.960918 34.070656 32.870605 0.0 0.108162 0.0