Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01031 ATGGCTCCTTCCGCTTCTTCGCCGGCTGCGGCGGCGGATCGGATTATCCACTACAGTCGTTCATTCTACCGGACGAAGGATCCTCGCAGTCATCTTTCTCTGTATCCGCCGCTGAAGAAGGTGAAGCCAATGTCTGAGATAATGGCCAAGGCTAAATTTGCGGTGGTGGATCGAGGAGATTATAGCGATGTGCGGTGCGAGCAATGCCGGTCCGGCGATAGAGCGGAGGAGCTGCTTCTGTGTGATAAATGCGATAAAGGGTTTCATATGAAATGTGTTAGGCCGATCGTCGTTAGGGTCCCGATTGGATCATGGCTTTGCCCCAAATGCTTTGGACAACGTAGAGGAAGACGTTTGTCTCAAAAGAGGATTATTGATTTCTTTAGAATTGAGAAATGTAAAGAACCAAAAGACAATAGTCCAATACGAGATTCAAGAAAGCGTCGTAGACGATCAGGATCACTTGGATTGCAAAAGAAGAGGAGGAGATTGTTACCATATACTCCAACTGAAGATCCTGGTCGAAGACTGAAGCAGATGGCTTCTCTAGCCTTTGCGTTAACCACATTGCAAATGAATTTCAGCGATGACCTTACTTACCTTCTCGATATGGCTCCTAGATCTGCCAATCAAGCCAAATTAGAAAATGGCGGCATGCAGGTTCTATCCAAGAAAGATTGCGAGACATGGAAACTTTGTTGTGAAATGAGCAAAAGGGGTGAATGCCCTCCGCTTTTCGTTGTTTATGATCCATATGAGGGTTTTACAGTGAAGGCTGATGGTCTGATAAAGGATCTGACTTTCATTGCTGAATATACGGGTGATGTGGATTACCTGAAAAACAGAGAACATGATGACTGCGATAGTATGATGACTCTTCTTTCTGCAAAAGATCCATCTAATAGCCTTGTCATTTGCCCCGACAAACGTGCGAATATTGTTCGGTTCATCAATGGGATAAATAATCATACTCCGGAAGGTAAGAGGAAGCAAAATTGTAAATGCGTGAGATACAATGTTAATGGTGAATGTCGGGTCTTTTTGGTCGCTACTCGTGATATCGATGAGGGAGAGAGGCTATATTACGACTATAACGGATATGAGCATGAATATCCGACTCACCATTTTGTTTAA 1134 44.18 MAPSASSPAAAADRIIHYSRSFYRTKDPRSHLSLYPPLKKVKPMSEIMAKAKFAVVDRGDYSDVRCEQCRSGDRAEELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCFGQRRGRRLSQKRIIDFFRIEKCKEPKDNSPIRDSRKRRRRSGSLGLQKKRRRLLPYTPTEDPGRRLKQMASLAFALTTLQMNFSDDLTYLLDMAPRSANQAKLENGGMQVLSKKDCETWKLCCEMSKRGECPPLFVVYDPYEGFTVKADGLIKDLTFIAEYTGDVDYLKNREHDDCDSMMTLLSAKDPSNSLVICPDKRANIVRFINGINNHTPEGKRKQNCKCVRYNVNGECRVFLVATRDIDEGERLYYDYNGYEHEYPTHHFV 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11944121 11947562 - Bma017386.1 Bma03g01031 79704

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01031 377 Gene3D SET domain 149 377 IPR046341 -
Bma03g01031 377 ProSiteProfiles Zinc finger PHD-type profile. 63 113 IPR019787 -
Bma03g01031 377 ProSiteProfiles SET domain profile. 243 365 IPR001214 GO:0005515
Bma03g01031 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 30 125 IPR013083 -
Bma03g01031 377 SUPERFAMILY FYVE/PHD zinc finger 34 111 IPR011011 -
Bma03g01031 377 CDD SET_ATXR5_6-like 240 377 - -
Bma03g01031 377 SMART PHD_3 65 111 IPR001965 -
Bma03g01031 377 SUPERFAMILY SET domain 226 365 IPR046341 -
Bma03g01031 377 PANTHER HISTONE ACETYLTRANSFERASE 9 375 - -
Bma03g01031 377 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 9 375 - -
Bma03g01031 377 Pfam SET domain 289 365 IPR001214 GO:0005515
Bma03g01031 377 ProSitePatterns Zinc finger PHD-type signature. 66 110 IPR019786 -
Bma03g01031 377 Pfam PHD-finger 65 110 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01031 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - jre:108990487 553.518
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01031 Bma-Chr3:11944121 Bma08g00393 Bma-Chr8:9578476 3.23E-149 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1273 Blo04g00967 . . . Bpe15g00400 . . . Cmo02g00627 Cmo20g01075 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01056 . . Bma03g01031 . . . . . Cma20g01067 . . Cpe05g01065 Cpe16g00078 Bhi10g01661 . . . . . . Cla02g00064 Cam02g0065 Cec02g0067 Cco02g0060 Clacu02g0064 Cmu02g0064 Cre02g0403 . . . Cme11g00068
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57060 PF00856 SET 1.50E-05 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01031 Bma_Chr03 FPKM 17.646259 17.741018 10.832738 11.474348 5.908062 4.851202 5.995437 11.80464 12.612984 14.898903