Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01033 ATGTTGACCTCAAATAGGGAAGAAGAGGATGTATTTTTCGACTCAGTAGAATTCCTGGTATCAGAAGGGTCCATTAAAGGAAATGAGGAAGAGTTAGACTATGAAATCTGGAGAAATGAGCCTCAAAGTCTTAGGAAAAGAAGAGAGAGCTTTCTATCTGGAATGGGTTTTACTGAATTTGCTTCTTCAAGGGCTCTTGTGCAAGATGTTAGAAATAATGGATTGGAGAGGCTCACAGAGCTCAGTGGAGCTGTTCAAAGCTCTGACATTTATAATGGTCAAGCAAATGAGAAGGAAGAAGATAATCAAGAAAACAGCTCAAATGAAGAAATATTCAACAGGGAAGAAGAAACAAGGGGCTGTGTAAAATATGTGACTGAGGCTGATACAAAAGAATGTGAGAATTTTGATGTTGGCAAAAAGAGAATTAAGCGATGGTGGAAAGTCTTCGTAAATCATACGAAAGAAAGAGCGAAACCTGCTTCATCGCAGTCCAAAACAATCAACGAAAACTCAAGAAAGGGTCGTGTTAAGGTGAGGCAGAAGAAAACAAAATTGGCAGAACTCACTGCTTTATATGTTAGACAAGAGTTTCAAGCTCATGAAGGCTTGGTTTGGGGCATGAAGTTTAGCCCGGATGGTCGATATTTAGCCAGTGGAGGTGAAGATGGAGTTGTTCGAATTTGGCGGGTTAAACTCGTTGATTCTTCAAGCTGTTCTTTACTCAACGAAGGCGGCTTTGATGAGACAACGAGAGCTGGGAATAATTTTCTAGCAAAGCCCTCAGGCCGGGCTGCTCTTCTTCTTCCAAAGAAGCTTTTTCAGATTGAAGAGTCCCCAATGCAAGAATTTCATGGCCATTCCAGTGATGTCTTAGACCTTGCATGGTCAAATTCCAACTGCCTTCTCTCTTCTTCCATGGATAAAACTGTTCGGCTATGGCAAGTTGGCTGCGACAGATGTCTACACGTTTTCCATCACCAGAATTATGTGACTTGCATCCAATTCAATCCTGTCGATGAGAATTATTTTATTAGTGGTTCTGTAGACGGGAAAGTTAGGATCTGGGGCGTGGCTGAAAAACGAGTAGTAGACTGGGCAGAGGTACGAGACGTGATTACTGCCATATCTTACCAACCAAATGGCAAAGGATTCGTAGTCGGCTCAGTCTTCGGCACATGCTCTTTCTATGAAGCCTCAGGTGAACATTGCTGGCTGGATGCTCAAATACACGTCGAAGGCAGAAAGAAAGCGTTGGGAAAAAGAATCACCGGAATACAGTTTTCTCGCGAAAACTTCCAAAGGGTGATGATAACATCCGAAGATTCAAAACTGCGCATATACGACTTGGATGGCCTCAAAATGGTTCAGAAATACAAAGGTCTTCAAAAGTCAGGCAGTCAAATGTCTGCCTCATTTACATCTAGTGGGAAACACATAGTCTCCGTCGGAGAAGATTCCCTGGTTTACTTCTGGAACTACGACGAAATCTCCCACCTTTCACCGAAAGAACCGAAATCCATTCAATCCTATGAGAATTTCTTGTCCGAAGGAGTGTCTGTTGCCGTTCCATGGCCAGGCTTGGGAACGGGAAAGAGTGGCATGGATAGCTTCCGGAACCTACCAGAGATTCTGTCTAGCCCGAGAGATTCCGAAGGATTCTTTTTCGGTAGTTGGTTCAATGCTGACAAAGCCTCAGCGACTTGGCCCGAAGAGAAACTTACTCTCCAATGTATGCCTTTCTTGGGAGCGAATGGAAGTCTTGTTGCTCCGGAAACTTGGGGCCTCGTGATCGTGACAGCCGGTTTCGATGGAATTATGAGGACCTTTCACAACTATGGACTGCCAATTCGAATTTAG 1860 43.71 MLTSNREEEDVFFDSVEFLVSEGSIKGNEEELDYEIWRNEPQSLRKRRESFLSGMGFTEFASSRALVQDVRNNGLERLTELSGAVQSSDIYNGQANEKEEDNQENSSNEEIFNREEETRGCVKYVTEADTKECENFDVGKKRIKRWWKVFVNHTKERAKPASSQSKTINENSRKGRVKVRQKKTKLAELTALYVRQEFQAHEGLVWGMKFSPDGRYLASGGEDGVVRIWRVKLVDSSSCSLLNEGGFDETTRAGNNFLAKPSGRAALLLPKKLFQIEESPMQEFHGHSSDVLDLAWSNSNCLLSSSMDKTVRLWQVGCDRCLHVFHHQNYVTCIQFNPVDENYFISGSVDGKVRIWGVAEKRVVDWAEVRDVITAISYQPNGKGFVVGSVFGTCSFYEASGEHCWLDAQIHVEGRKKALGKRITGIQFSRENFQRVMITSEDSKLRIYDLDGLKMVQKYKGLQKSGSQMSASFTSSGKHIVSVGEDSLVYFWNYDEISHLSPKEPKSIQSYENFLSEGVSVAVPWPGLGTGKSGMDSFRNLPEILSSPRDSEGFFFGSWFNADKASATWPEEKLTLQCMPFLGANGSLVAPETWGLVIVTAGFDGIMRTFHNYGLPIRI 619
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11964516 11967271 - Bma017388.2 Bma03g01033 79706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01033 619 Gene3D - 181 514 IPR015943 GO:0005515
Bma03g01033 619 SMART WD40_4 318 357 IPR001680 GO:0005515
Bma03g01033 619 SMART WD40_4 359 398 IPR001680 GO:0005515
Bma03g01033 619 SMART WD40_4 191 230 IPR001680 GO:0005515
Bma03g01033 619 SMART WD40_4 277 315 IPR001680 GO:0005515
Bma03g01033 619 SMART WD40_4 409 449 IPR001680 GO:0005515
Bma03g01033 619 SMART WD40_4 452 493 IPR001680 GO:0005515
Bma03g01033 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 324 356 - -
Bma03g01033 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 324 356 IPR001680 GO:0005515
Bma03g01033 619 PANTHER WD REPEAT DOMAIN 44 5 619 IPR040324 -
Bma03g01033 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 316 - -
Bma03g01033 619 SUPERFAMILY WD40 repeat-like 192 496 IPR036322 GO:0005515
Bma03g01033 619 Pfam WD domain, G-beta repeat 320 356 IPR001680 GO:0005515
Bma03g01033 619 Pfam WD domain, G-beta repeat 279 314 IPR001680 GO:0005515
Bma03g01033 619 Pfam WD domain, G-beta repeat 196 229 IPR001680 GO:0005515
Bma03g01033 619 MobiDBLite consensus disorder prediction 94 113 - -
Bma03g01033 619 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 5 619 - -
Bma03g01033 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 316 IPR001680 GO:0005515
Bma03g01033 619 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 232 IPR001680 GO:0005515
Bma03g01033 619 PRINTS G protein beta WD-40 repeat signature 302 316 IPR020472 -
Bma03g01033 619 PRINTS G protein beta WD-40 repeat signature 217 231 IPR020472 -
Bma03g01033 619 PRINTS G protein beta WD-40 repeat signature 344 358 IPR020472 -
Bma03g01033 619 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 232 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01033 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - vvi:100247276 656.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01033 Bma06g00513 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01033 Bma-Chr3:11964516 Bma06g00505 Bma-Chr6:25250304 0 dispersed
Bma15g00824 Bma-Chr15:20240482 Bma03g01033 Bma-Chr3:11964516 0 transposed
Bma03g01033 Bma-Chr3:11964516 Bma06g00513 Bma-Chr6:26694669 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1267 Blo04g00968 . . Bda10g00359 Bpe15g00398 . . . . . Cma03g01085 Cma07g00791 Car03g00975 Car07g00777 . . . Bhi03g01375 . . . Hepe04g1122 . . Cla01g01526 Cam01g1596 Cec04g1240 Cco04g1310 Clacu01g1620 Cmu01g1506 Cre04g1185 . . Cone6ag1293 . Lsi01g01138 . . Cme08g01072 . . . Bda14g01058 . Bpe06g00273 Bma03g01033 Bma06g00513 . Cmo03g01072 Cmo07g00814 . . . . . . . . . . . . . . . . . . . . . Csa06g02793 Chy02g01042 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003346 3 4 4 4 4 1 2 1 1 1 1 1 2 1 1 2 1 2 0 1 1 1 1 1 1 1 1 3 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01033 Bma_Chr03 FPKM 6.927344 6.137557 17.491344 18.950659 0.21267 0.088381 0.0 1.983705 1.085756 1.26904