Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01034 ATGCCCCAAGATAATGCCGAGTTGAACGCAGCAAAGCGCGGGTACAGGAACGCCAAAGCCGAAGGCAACCATCAGGAGGAAGCCAGATGGGCTAACGTGATCGGCAATAGTTTGAAGAATCGGGGTCAGTATGTGGAGGCTCTCAAATGGCTCCGCATTGATTATGAAGTTACGGTCAAGTATTTGCCTGAGAAGCACTTACTCTCTTCGTGTCAGTCTCTTGGCGAGGTCTATCTCAGACTTGAGTACTACAAGGATGCTCTGATTTATCAGAAAAGGCACCTAGAGCTAGCTAAAGACGCTGATGATCTTGTTGAGCAACAAAGAGCTAGTACTCAACTAGGTCGTACTTACCATGAGATGTTCTCAAGATCTGAGGATGATCATTGCTCAGTTCGCAATGCCAAAAAGTATTTTAAGTCTGCCATGAAGCTTGCAAAAACTTTAAAAGAGAACCCTGGAAGTAGCAAATGTTCCTTTCTCAAGGAATATATTGATGCTCATAATAATTTAGGAATGCTTGAAATAGATCTTGATAACTTGGTAGAAGCCCATAAAATACTGACGAAAGGATTGGAAATTTGTGATGAGGAAGAGGTGATTGAAAATGATGATGGTCGCAGCAGGCTCCATCACAACCTTGGAAATGTATACTTGGAGATGAGGATGTGGGATGAAGCTCGGAAACACATTGAGAAAGATGTCATTATTTGTAATAAAATCGGACACTGCCAAGGGGAGGCAAAGGGATATATAAACCTTGGTGAACTGTATTATAGGGTTCAAAAGTATGATGATGCACTTTTATGCTATCATAAGGCGCTTGATCTAGCAAAATCCATGGAAGATGAGGATGCCTTAGCGAGGCAAGTTGAGGGAAATATTGAAACTACAAAGGAAGCTATGAAAGTAATGGCTGAGTTGAAGAAAGAAGAGCAAAATCTTAAGAAATTAGTGAGGGACATTGCTATTGCAAGAGGCACACCTTGTGAGAGGAAGTGTTTGCTGCAGCAGCTTGATTCACTAGATTGTCTCATCGAGAAAGCACGGTTGATTTTTGCTTGGACGAAGAATCTTGAGTTTGCAAAAAGAAAGAAGAGAGTAGCCAGTGAACTATGTGACAAGGAAAAGCTAAGTGATTCATTTCTGGTTATCGGCGAGTCATATCAGAAGCTTAGGAAGTTTGAAAAAGCCTTTAAATGGCATTCAAAGAGTTGGGAAATGTACAAGTCAATCGGTAACTTGGAAGGACAGGCTATGGCAAAGATCAATATCGGTGACGTTTTGGACTATGATGGTAAGTGGAAAGAAGCTCTAAATTCATTTGAAGAGAGCTACAGAATTGCTATTGAAGCAAACCTTCCCGCTGTGCAGCTCTCAGCACTCGAAAATATGCACTATTGTCATATGATACGATTTGACAATATTGATGAGGCAAGGAGGTTGCAGGCTCTAATTGATCACTTGAAGCAGTCAAACAAAGGAGATCTTGAAACCCAAAAGGTTTTAGAAGACTGCTGCTCTGAGACTGATACAGAAGCAAATGAACGATTGTCTGTAACGCCAGAGGCATCTTGCTCGAGTAAGATGACAAATGCCAGTGACCGTCGATCACATTCTAAAGATGGTATGGCAGAATCAGACGATGATATAACGCTAATTTCACTACTCAGGTCCCGGGGAACTTTTTCCAAAATGAAAGCTTCTCATAGAAATAAACAAAGAGTTTCTGCAAGCCCAATTCAAGTGTCACCTAAAACTTTGTCCAAATCAGCCAGTGATCAGCAAAAAGTTGTTGGTCGTAAAAGAGTTCGCATTATCCTTTCTGATGATGAAGGTGAAATGCTTAATGAGATGGAGTTGTCAAAAGAAAGACACCCAATAATGCCAAGTGAGAATGTTGCCACGTCTATTACATCTGCGGCCTATGATGGTGCTGGAAGGTCTGGTGAGTGTGTGGAAGAAAGTACTAGTTCATACAAATGCAAGAGTGATAATAAAACCTTTCAAGATGATGAAGCTTTTAGATCAAGTTCTAATCAAGGCTTGGCATCTGAGACTGCCGCTAGTGGCTCCAAACGTGAAATAGACATCTTCAAAAACTTATTGCATACATATGATGCTGATCATCTGAAGTTGCATCATTCTGATGATGAGGGCCAGCGTGTTGCTTTCAAGATTGATAACATCCTGTTACAAGTTGAAGTAGGCTCCTTCTTGGTTGGTGATAAGTTGGACACGGAATCATTGAAGGATGAATTAGCATGCTTATACTATCTACAACTTCCCAAAGAAAAGAAGTTGGAAGGTCTTTTGCCTGTTATTGGAAGTGTTAGTTGTGATGTAAGAGTTCTGAAGTCACTAGAAACAAATGAGAATCCAAAGGAAGATGGGGTAAACACCTTGGTTGAAGCTGTCATTCATGGATGGGTTTCGAAGCCCTTGATTAAATTGTATATAAATTACTGCAAAGAGTTGTCTGAGGCACCAAACATGAAGTTACTGAAGAAACTTTATAATTTAGAGTGTTCAGATGATGAAATTACTGTATCAGAATGTGATTTGCAAGATTTGTCTATTAGTCCCCTGGTAAATGCACTGCACGTTCACAAAACATTTGCTGTGCTTGATCTTTCTCACAATTTTTTAGGAAACGGAACTGCGGAAAAAATTCAACGGGTATTTACACTCTCAGGACAATCAAATGACTTAACTTTGGATTTACATTGCAATCGATTTGGTCCGACCACTCTATATCAGATTTGTGAATGTCCTGTACTATTTACTCGGCTGCAAGTTCTCAACATATCTGGAAATCGCCTCACTGATGCCTGTGGAACTTATCTCTCAACCATATTAAAAAACTGTAAAGGCCTTTGGAGTTTGAATATAGAACGCTGCTCTATCACGTCTAGAACAATTCAGAAGGTCGCTGATGCCTTGCACACTGAATCCACACTGGAACAACTTTGTTTAGGATACAATAACCCTATATCTCAAAATGTCCTTATTAATTTGCTCGTCAAGCTTGAAACTCTGAATAGGCTTTCAAAATTGAATCTGAACGGTTTGAAGCTAAACAAGCCTGTCATTGACAGTCTAATCCATCTTGTAAAGGTCCCACGTTTTTCTGGACTAATGGTTGGAGATACAGGTGTTGGAACTGATGGAGCATTACAATTAACTGAGGCTTTGTTCAATGGCAGTGATGAGTTTGTTAAACTTGATGTATCTTATTGTGGGCTAACGCCTGCCTACTTTATAAAACTCAACAATATCTCTCAGATTCATCTCATTCATGAGCTAAACCTTTCTGGCAACTCTTTAATGACACAGGGTTGTAATGCAGTCACATCATTGCTGACAAACGCACATTGTTGGCTTAAAATATTAATCCTTAACACCTGTCAGCTTGGACATGATGGAGTTTTGCAAGTAATTCAGGCATTACAAGAAAATTGTCATCTTGAAGAACTCAATCTCGCCAATAACATAAATCTGGACGAGCAAGAACACATTCCATTTAACTTCACAGCAAAACAGAAATCTGAACCCTCAGACTCAAGCCTCAAAGAGCCATCATCAACACCCTGTTTGGCCATGGAGATTGAGACTGTTCAACACGATTTAGGCATTGCCAATCCCAACTACAATGAGCTTGAAGTTGCTGATAGTGAAGATGGCCCCAATGGAATCGAAGCCGCATCTGGAATTGACAATAGTTGTGTGAGTTCATGTTATAGGAACCCATCATCTCTAAAAACCAACTTTTTTATGGAGCTCTTAGGAGCCATTGAACTGGCAAAGACACTGCAGTTATTGGATCTTAGCAACAACGGTTTCTCGGCACAAAATGCAGAAAAATTGTTCAACGCATGGTCCAACTCAAGGGCAGGTTTAGCCGTTAGTCATATCAAGGACAAGACAATTCATTTGTCGGTGAAAGGAGTAAAATGCTGCGTTAAACCCTGCTGCAGAAAGGAATAG 3987 40.36 MPQDNAELNAAKRGYRNAKAEGNHQEEARWANVIGNSLKNRGQYVEALKWLRIDYEVTVKYLPEKHLLSSCQSLGEVYLRLEYYKDALIYQKRHLELAKDADDLVEQQRASTQLGRTYHEMFSRSEDDHCSVRNAKKYFKSAMKLAKTLKENPGSSKCSFLKEYIDAHNNLGMLEIDLDNLVEAHKILTKGLEICDEEEVIENDDGRSRLHHNLGNVYLEMRMWDEARKHIEKDVIICNKIGHCQGEAKGYINLGELYYRVQKYDDALLCYHKALDLAKSMEDEDALARQVEGNIETTKEAMKVMAELKKEEQNLKKLVRDIAIARGTPCERKCLLQQLDSLDCLIEKARLIFAWTKNLEFAKRKKRVASELCDKEKLSDSFLVIGESYQKLRKFEKAFKWHSKSWEMYKSIGNLEGQAMAKINIGDVLDYDGKWKEALNSFEESYRIAIEANLPAVQLSALENMHYCHMIRFDNIDEARRLQALIDHLKQSNKGDLETQKVLEDCCSETDTEANERLSVTPEASCSSKMTNASDRRSHSKDGMAESDDDITLISLLRSRGTFSKMKASHRNKQRVSASPIQVSPKTLSKSASDQQKVVGRKRVRIILSDDEGEMLNEMELSKERHPIMPSENVATSITSAAYDGAGRSGECVEESTSSYKCKSDNKTFQDDEAFRSSSNQGLASETAASGSKREIDIFKNLLHTYDADHLKLHHSDDEGQRVAFKIDNILLQVEVGSFLVGDKLDTESLKDELACLYYLQLPKEKKLEGLLPVIGSVSCDVRVLKSLETNENPKEDGVNTLVEAVIHGWVSKPLIKLYINYCKELSEAPNMKLLKKLYNLECSDDEITVSECDLQDLSISPLVNALHVHKTFAVLDLSHNFLGNGTAEKIQRVFTLSGQSNDLTLDLHCNRFGPTTLYQICECPVLFTRLQVLNISGNRLTDACGTYLSTILKNCKGLWSLNIERCSITSRTIQKVADALHTESTLEQLCLGYNNPISQNVLINLLVKLETLNRLSKLNLNGLKLNKPVIDSLIHLVKVPRFSGLMVGDTGVGTDGALQLTEALFNGSDEFVKLDVSYCGLTPAYFIKLNNISQIHLIHELNLSGNSLMTQGCNAVTSLLTNAHCWLKILILNTCQLGHDGVLQVIQALQENCHLEELNLANNINLDEQEHIPFNFTAKQKSEPSDSSLKEPSSTPCLAMEIETVQHDLGIANPNYNELEVADSEDGPNGIEAASGIDNSCVSSCYRNPSSLKTNFFMELLGAIELAKTLQLLDLSNNGFSAQNAEKLFNAWSNSRAGLAVSHIKDKTIHLSVKGVKCCVKPCCRKE 1328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12032447 12052477 - Bma017391.1 Bma03g01034 79707

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01034 1328 Gene3D Ribonuclease Inhibitor 816 1189 IPR032675 -
Bma03g01034 1328 SMART tpr_5 68 101 IPR019734 GO:0005515
Bma03g01034 1328 SMART tpr_5 419 452 IPR019734 GO:0005515
Bma03g01034 1328 SMART tpr_5 165 198 IPR019734 GO:0005515
Bma03g01034 1328 SMART tpr_5 248 281 IPR019734 GO:0005515
Bma03g01034 1328 SMART tpr_5 208 241 IPR019734 GO:0005515
Bma03g01034 1328 SMART tpr_5 379 412 IPR019734 GO:0005515
Bma03g01034 1328 MobiDBLite consensus disorder prediction 513 533 - -
Bma03g01034 1328 SMART LRR_RI_2 1125 1152 - -
Bma03g01034 1328 SMART LRR_RI_2 928 955 - -
Bma03g01034 1328 SMART LRR_RI_2 1268 1295 - -
Bma03g01034 1328 SMART LRR_RI_2 1096 1123 - -
Bma03g01034 1328 SMART LRR_RI_2 870 897 - -
Bma03g01034 1328 MobiDBLite consensus disorder prediction 573 595 - -
Bma03g01034 1328 Pfam Tetratricopeptide repeat 208 280 - -
Bma03g01034 1328 Pfam Tetratricopeptide repeat 385 449 - -
Bma03g01034 1328 Gene3D Tetratricopeptide repeat domain 5 326 IPR011990 GO:0005515
Bma03g01034 1328 PANTHER PROTEIN TONSOKU 1 1327 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Bma03g01034 1328 SUPERFAMILY TPR-like 383 498 IPR011990 GO:0005515
Bma03g01034 1328 MobiDBLite consensus disorder prediction 565 596 - -
Bma03g01034 1328 SUPERFAMILY TPR-like 135 285 IPR011990 GO:0005515
Bma03g01034 1328 Gene3D Tetratricopeptide repeat domain 331 495 IPR011990 GO:0005515
Bma03g01034 1328 ProSiteProfiles TPR repeat profile. 248 281 IPR019734 GO:0005515
Bma03g01034 1328 MobiDBLite consensus disorder prediction 1 21 - -
Bma03g01034 1328 Coils Coil 294 328 - -
Bma03g01034 1328 ProSiteProfiles TPR repeat region circular profile. 248 277 - -
Bma03g01034 1328 MobiDBLite consensus disorder prediction 512 546 - -
Bma03g01034 1328 SUPERFAMILY RNI-like 834 1295 - -
Bma03g01034 1328 SUPERFAMILY TPR-like 20 197 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01034 - - - bhj:120073724 1580.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1265 Blo04g00969 . . . Bpe15g00397 . . . . . Cma03g01081 . Car03g00971 . Sed10g0490 . Cpe10g00348 Bhi03g01379 Tan03g1329 Cmetu08g0165 . Hepe04g1126 . . Cla01g01530 Cam01g1598 Cec04g1243 Cco04g1312 Clacu01g1623 Cmu01g1509 Cre04g1188 . . . . Lsi01g01135 . . Cme08g01069 . . . Bda14g01059 . . Bma03g01034 . . Cmo03g01070 . . . . . . . . . . . . . . . . . . . . . . Csa06g02797 Chy02g01038 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011042 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01034 Bma_Chr03 FPKM 33.308128 31.994875 36.808437 33.422855 25.251738 30.899088 25.902714 26.591038 27.263494 26.939718