Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01035 ATGGGGATGACGAAGGAAAAAGTTGAATCTTCATTGAAGTCTAAACTTAATCCCTCGTATCTAGATGTCATTGACACATCAGGAGGGTGTGGAGCGAGTTTTGCAATAGAGATTGTATCGGAAGAGTTTGAAGGAAAAAGCTTGCTGGCGAGGCATCGGCTTGTCAACGCTGCCCTGCAGGAGGAGATGAAGGAGATTCATGCCCTCTCCATAAAGAAAGCTTTCACCCCTGACCAGTGGAAGAAACAGGCATCAAATTCTACTCCTTAA 270 45.19 MGMTKEKVESSLKSKLNPSYLDVIDTSGGCGASFAIEIVSEEFEGKSLLARHRLVNAALQEEMKEIHALSIKKAFTPDQWKKQASNSTP 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12109626 12111052 - Bma017393.1 Bma03g01035 79708

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01035 89 PIRSF BolA 1 89 IPR002634 -
Bma03g01035 89 Gene3D - 3 88 IPR036065 -
Bma03g01035 89 PANTHER BOLA-LIKE PROTEIN-RELATED 1 87 IPR045115 GO:0051537|GO:0097428
Bma03g01035 89 Pfam BolA-like protein 12 79 IPR002634 -
Bma03g01035 89 PANTHER BNAA09G06960D PROTEIN 1 87 - -
Bma03g01035 89 SUPERFAMILY BolA-like 1 84 IPR036065 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01035 - - - qlo:115950983 138.272
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01035 Bma06g00528 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01035 Bma-Chr3:12109626 Bma08g00139 Bma-Chr8:1816503 6.06E-06 dispersed
Bma05g01357 Bma-Chr5:53097280 Bma03g01035 Bma-Chr3:12109626 5.53E-09 transposed
Bma10g00602 Bma-Chr10:7337955 Bma03g01035 Bma-Chr3:12109626 4.38E-09 transposed
Bma03g01035 Bma-Chr3:12109626 Bma06g00528 Bma-Chr6:27214219 5.61E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1235 . . . . Bpe15g00396 Bpe13g00012 . . . Cmo20g01081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01060 . . Bma03g01035 Bma06g00528 Sed05g3844 . . . Cma20g01074 . . . . Bhi10g02340 Tan07g0888 Cmetu11g1866 . Hepe08g1259 . . Cla02g00073 Cam02g0074 Cec02g0075 Cco02g0068 Clacu02g0072 Cmu02g0071 Cre02g0411 Lsi10g00708 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012275 1 1 0 2 2 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01035 Bma_Chr03 FPKM 1.022523 2.004413 3.940549 2.458373 2.152989 0.0 4.008228 1.645695 2.006438 1.205583