Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01036 ATGCTGGAAATTCCAAGTTTACCGGGAAATCCAGACGTGTCAACGGAGAATGGGGAAGACAGTGTGTTTGGCGAGGATGAGAGAATCGGAGTCGGAAACCGGTGGCCTCGTCAAGAGACTTTGGTTTTGTTGAAGATAAGGTCGGAAATGGATTCGGCTTTTAGAGACGCCAATCTTAAAGGTCCGCTATGGGAAGAAGTTTCCAGGAAACTATTGGAACTAGGATTTAATAGGAGTGCTAAGAAATGCAAGGAGAAGTTTGAAAACATCTACAAATACCACAAAAGAACCAAGGAAGGCCGATCGGCCCGGCAGAATGGAAAGATGTATCGGTTTTTTGAGCAATTAGAAGCTCTAGACACCCTTCCGATGCATACATACCCTTCTTCGACAGAAAAAATCCAAACTCCAGTTTCAGAAATCCCACGGATAAGCAACACTACTATTGTCCACAACGCAATTCCGTGTTCTATGATAAACCCAAATTCAAATTTCATCGACTCATCGAGTTCGACTCCGACTACGTCAAGTTCAAGCAAGGATTCGGAGAGAAGGCAGAAGAAGAAGAGAAAGTTTGGGGAGTACTTTGAGAAGCTGATGAAGGAAGTGATCGAAAAGCAAGAGAATTTGCAGAGGAAGTTCTTAGAGGTTTTGGACAAATGTGAACAAGAAAGGATAGCTAGAGAAGAAGCATGGAAAGTTCAAGAACTGGCTAGGATAAAGCGAGAGAGGGAGCTTCTCGTCCAAGAGCGATCAATTGCGGCTGCAAAGGATGCAGCTGTGCTTACTTTCCTACAAAAATATGCTGACCAGTTGGGGCCGGTGCAGTTGCCGGAAAACATAACTCCGTGGGAGAATGTCTCAGAGAAGCAAAATGATAGTAACGGCGTGAAAGTTGTGGATAGTCGAGAAAATAGCAACGGCGGGAATTCAATCCACGTGAGCTCTTCTCGTTGGCCGAAAGATGAAGTGGAGGCCTTAATCCATATAAGGAGTAACCTCGACATGCAGTGTGTCGAAAATGGACAAAAAGGCTCGCTCTGGGAAGAAATCTCATTGGCGATGAAGAAACTCGGGTATGATAGGAATGCAAAGAGGTGTAAAGAGAAATGGGAGAACATAAACAAGTACTTTAAGAGGGTGAAAGAGAGCAATAAGAGGAGGCCGGAAGATTCGAAGACTTGTCCGTATTTTCACCAGCTCGATGCGTTGTACAAAGAGAAGACGAAGAAGCTGGATAGCTCGAGAAACTCACGATATGAGTTGAAACCAGAGGAGCTCTTAATGCACATGGTGGACGGCGAAGAACCGCCCCTCCAAATTGAATCTGCCGTGGATGATGGCGAAGGCCAAAAAGTCGATCAAAATCAACAAGATCATGAAAATAACGATGATGAAGATGACGATGAAGACGGCGACTATCAGCTTGTAGCTCACGATAATCCGATGGAAGTAATGAGCTAA 1464 44.67 MLEIPSLPGNPDVSTENGEDSVFGEDERIGVGNRWPRQETLVLLKIRSEMDSAFRDANLKGPLWEEVSRKLLELGFNRSAKKCKEKFENIYKYHKRTKEGRSARQNGKMYRFFEQLEALDTLPMHTYPSSTEKIQTPVSEIPRISNTTIVHNAIPCSMINPNSNFIDSSSSTPTTSSSSKDSERRQKKKRKFGEYFEKLMKEVIEKQENLQRKFLEVLDKCEQERIAREEAWKVQELARIKRERELLVQERSIAAAKDAAVLTFLQKYADQLGPVQLPENITPWENVSEKQNDSNGVKVVDSRENSNGGNSIHVSSSRWPKDEVEALIHIRSNLDMQCVENGQKGSLWEEISLAMKKLGYDRNAKRCKEKWENINKYFKRVKESNKRRPEDSKTCPYFHQLDALYKEKTKKLDSSRNSRYELKPEELLMHMVDGEEPPLQIESAVDDGEGQKVDQNQQDHENNDDEDDDEDGDYQLVAHDNPMEVMS 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12114161 12115943 + Bma017394.1 Bma03g01036 79709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01036 487 CDD GT1 317 382 - -
Bma03g01036 487 SMART sant 31 93 IPR001005 -
Bma03g01036 487 SMART sant 315 377 IPR001005 -
Bma03g01036 487 CDD GT1 33 98 - -
Bma03g01036 487 Coils Coil 204 224 - -
Bma03g01036 487 MobiDBLite consensus disorder prediction 164 179 - -
Bma03g01036 487 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 16 479 - -
Bma03g01036 487 Gene3D - 35 96 - -
Bma03g01036 487 Gene3D - 319 380 - -
Bma03g01036 487 MobiDBLite consensus disorder prediction 460 474 - -
Bma03g01036 487 MobiDBLite consensus disorder prediction 164 189 - -
Bma03g01036 487 PANTHER - 16 479 - -
Bma03g01036 487 ProSiteProfiles Myb-like domain profile. 311 375 IPR001005 -
Bma03g01036 487 Pfam Myb/SANT-like DNA-binding domain 33 119 IPR044822 -
Bma03g01036 487 Pfam Myb/SANT-like DNA-binding domain 317 404 IPR044822 -
Bma03g01036 487 MobiDBLite consensus disorder prediction 1 29 - -
Bma03g01036 487 MobiDBLite consensus disorder prediction 436 487 - -
Bma03g01036 487 ProSiteProfiles Myb-like domain profile. 33 91 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01036 - - - csv:101215942 575.859
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01959 Bma-Chr1:72674724 Bma03g01036 Bma-Chr3:12114161 1.19E-18 dispersed
Bma03g01036 Bma-Chr3:12114161 Bma04g00368 Bma-Chr4:2952372 1.78E-11 dispersed
Bma13g00464 Bma-Chr13:8763867 Bma03g01036 Bma-Chr3:12114161 1.09E-15 dispersed
Bma03g01036 Bma-Chr3:12114161 Bma04g00367 Bma-Chr4:2943805 1.08E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1234 Blo04g00970 . . . Bpe15g00395 . . . Cmo02g00617 Cmo20g01084 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01036 . Sed01g3751 . . . Cma20g01075 . . Cpe05g01074 . Bhi10g02341 Tan07g0890 Cmetu09g0584 . Hepe08g1260 . . Cla02g00074 Cam02g0075 Cec02g0077 Cco02g0069 Clacu02g0073 Cmu02g0072 Cre02g0412 Lsi10g00706 . . Cme11g00078
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008720 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57061 PF13837 Myb_DNA-bind_4 2.00E-21 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01036 Bma_Chr03 FPKM 7.788288 8.294 9.801376 10.413901 11.332573 12.28384 12.318982 8.882062 8.151612 8.793139