Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma03g01039 | ATGGAGAAATCCCCAGAGGAAGAACACCCACAGAAGGCTTTTGGTTGGGCTGCTAGAGACACTTCTGGTCTCCTCTCTCCCTTCCATTTTTCCAGAAGAGACAATGGAGATGATGACGTAACTGTGAAGGTTCTGTACTGTGGGGTTTGCCATTCTGACCTACACTGTGTTAAGAATGAGTGGGGCTACACAAGTTATCCTATTGTTCCCGGGCACGAAATCACTGGTATCGTGACCAAGCTCGGAAGCAACGTGAAGAAGTTCAACGTGGGCGACCGAGTTGGAGTCGGCGTGATAATAGGGTCGTGTAGGAGCTGCGACAAATGCGAAGACGACTTGGAAAACTACTGTCCTAAAGTGATGTTCACATATAACTCATTCTTCCACGATGGAACAAAAAACTATGGAGGCTATTCTGATATGATTGTGGTGGATCAGCATTTTGTTCTTCGATTTCCAGAAAATTTACCTCTCGATTCGGGAGCTCCTCTCCTGTGCGCCGGAGTTTCGATCTACAGCCCGATGAAATATTATGGAATGACAGAGGCCGGCAAGCATTTGGGGGTGGTCGGGCTGGGTGGTCTAGGCCATGTTGCTGTCAAAATTGGGAAGGCATTTGGGTTGAAAGTTACTGTCATTAGTACCTCCCCCTCCAAGGAAGATGAGGCCATTAACAAGCTTGGTGCTGATTCTTTCCTTGTCTCCACTGATCCACTCAAAGTAAAGGCAACTCTGGGCAGCATGGATTTCATAATTGACACAGTGGCTGCTGTCCATCCCCTTGCTCCGCTGCTTGGTTTGTTGAAGATTAATGGAAAGCTGATTACAGTGGGTCTGCCTATTCAGCCCCTTGAGCTCCCTGTCTTTCCCCTCGTCTTCGGAAGGAAGATGGTAGGGGGGAGTGACGTTGGAGGAGTAAAAGAGACACAAGAGATGCTGGACTTCTGTTCAAAACACAACATTTCGTCCGACATCGAACTCATCAAGATCGATGAAATCAACACAGCATTCGAAAGGCTGGCCAAATCGGACGTCCGGTATCGATTTGTGATAGACGTGGCGAATTCCCTGACGAAGTAA | 1080 | 47.96 | MEKSPEEEHPQKAFGWAARDTSGLLSPFHFSRRDNGDDDVTVKVLYCGVCHSDLHCVKNEWGYTSYPIVPGHEITGIVTKLGSNVKKFNVGDRVGVGVIIGSCRSCDKCEDDLENYCPKVMFTYNSFFHDGTKNYGGYSDMIVVDQHFVLRFPENLPLDSGAPLLCAGVSIYSPMKYYGMTEAGKHLGVVGLGGLGHVAVKIGKAFGLKVTVISTSPSKEDEAINKLGADSFLVSTDPLKVKATLGSMDFIIDTVAAVHPLAPLLGLLKINGKLITVGLPIQPLELPVFPLVFGRKMVGGSDVGGVKETQEMLDFCSKHNISSDIELIKIDEINTAFERLAKSDVRYRFVIDVANSLTK | 359 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 12141113 | 12143297 | + | Bma017398.1 | Bma03g01039 | 79712 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma03g01039 | 359 | Pfam | Alcohol dehydrogenase GroES-like domain | 38 | 150 | IPR013154 | - | |
| Bma03g01039 | 359 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 156 | 321 | IPR036291 | - | |
| Bma03g01039 | 359 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 71 | 85 | IPR002328 | GO:0008270|GO:0016491 | |
| Bma03g01039 | 359 | PANTHER | CINNAMYL ALCOHOL DEHYDROGENASE 2-RELATED | 11 | 357 | - | - | |
| Bma03g01039 | 359 | PANTHER | ALDEHYDE REDUCTASE | 11 | 357 | - | - | |
| Bma03g01039 | 359 | Pfam | Zinc-binding dehydrogenase | 194 | 317 | IPR013149 | - | |
| Bma03g01039 | 359 | CDD | CAD1 | 14 | 352 | - | - | |
| Bma03g01039 | 359 | SMART | PKS_ER_names_mod | 23 | 351 | IPR020843 | GO:0016491 | |
| Bma03g01039 | 359 | Gene3D | - | 167 | 323 | - | - | |
| Bma03g01039 | 359 | SUPERFAMILY | GroES-like | 22 | 185 | IPR011032 | - | |
| Bma03g01039 | 359 | Gene3D | - | 16 | 353 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma03g01039 | Bma-Chr3:12141113 | Bma03g01194 | Bma-Chr3:17950504 | 1.39E-170 | dispersed | |
| Bma03g01363 | Bma-Chr3:30918434 | Bma03g01039 | Bma-Chr3:12141113 | 3.35E-117 | transposed | |
| Bma05g00184 | Bma-Chr5:5157125 | Bma03g01039 | Bma-Chr3:12141113 | 3.90E-138 | transposed | |
| Bma03g01039 | Bma-Chr3:12141113 | Bma06g00531 | Bma-Chr6:27263080 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma03g01039 | K00083 | - | dcr:108215375 | 607.06 |