Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01040 ATGGATGCGGGCGGTCGACTCATTGCTGGCTCTCACAATCGGAACGAGTTTGTTCTTATCAATGCTGAAGAAAATGGACGAATCATGTCTGTGAAAGAGCTGAGCGGCCAAGTATGCCACATTTGCGGGGATGAGATAGAAATTGCGTTCGACGGAGAGCCATTTGTCGCCTGTAATGAATGCGCTTTTCCCGTGTGTCGACCTTGCTACGAGTACGAGAGGAGAGAAGGAAATCAAGCTTGCCCTCAGTGTAAAACTAGATATAAACGCATCAAAGGCAAAGCTTTTTCCTTTTTTTTTTTTCAGAATTCTTATTCTCCAAGGGTTGAGGGTGACGAGGAAGAAGATGACATTGATGATTTGGACAATGAATTTGACTACGAGACGACGGGTTCACAACACGGGTCAGAAGCTTTGTTTAGTTCTCGCTACAACACAGTTCGTAGTTCATCTGGAATTCCCTCACATGCGGAAAACAAATCTTCCACTGCCCCAACCGAAATCCCTTTGCTTACCTATGGTGAGAAGGATTCAGATATATCTACCGATCAACACGCTCTTATTGTACCACCCTTTATTGATAATGGAAACAGAGTTCATTTTATGCCTTCTTCCGACCGTTCCATATCTTTGCAATCCAGACCTATGGTTCCGAATAAAGATATTGCAGTTTATGGGTATGGGAGTGTGGCAGGGAAGGATCGAATGGACGAGTGGAAGAGAAGGCAAAATGATAAACTTCAGGTGGTTAAGCACCATGATGAAAATGATCTCGATTATTCTGATATCCCCATGATGGATGAGGGAAGGCAGCCATTATCAAGGAAATTACCTATCTCTTCGAGCAAGATAAATCCTTATCGATTAATTATAATTCTTCGACTTGTTATCATTAGCTTCTTTTTCCATTATCGACTGCGTCATCCGGTCCACGATGCATATGGCTTGTGGTTGACATCTGTTATATGTGAAATTTGGTTTGCTGTGTCGTGGATTCTTGATCAGTTTCCCAAATGGTACCCTATTGAACGAGAAACATATCTCGATCGCTTATCACTGAGGTATGAAAAAGAAGGGAAGCCTTCAGAGTTAGCCAATGTAGACATCTTTGTTAGTACAGTCGATCCGACGAAGGAACCTCCATTAATTACTGCAAACACTGTTCTTTCCATCCTTGCCGTTGATTATCCGGTGGAGAAAGTCGCGTGCTATGTCTCAGATGATGGAGCAGCGATGTTAACGTTCGAAGCTTTGTCTGAGACGACGGCGTTTGCTAGAAAGTGGGTCCCGTTTTGTAAGAAGTTCAATATCGAGCCTCGGGCCCCGGAGTGGTATTTTTGTCAGAAGATTGATTACTTGAAAAACAAAGTCCATCCTGCCTTTGTGAGGGAAAGGCGCGCAATGAAGAGGGAATACGAAGAATTTAAAGTCAAGATAAATGGACTTGTAGGGATGGCACAAAAAGTCCCCGAGGAAGGCTGGACGATGCAGGATGGAACTCCATGGCCGGGGAACCTTGTCCGGGACCATCCCGGCATGATTCAGGTCTTTCTCGGTGAAAATGGAGTTCGTGATTGTGATGGGAATGAGCTACCTAGGTTGGTTTATGTTTCTCGTGAAAAGAGACCAGGGTTCGAGCACCACAAAAAGGCCGGGGCTATGAATGCTCTGGTGAGAGTTTCAGCTGTTCTTTCAAATGCACCTTATCTTCTGAATGTGGACTGCGATCACTATATCAATAACAGCAAGGCTATCCGAGAAGCTATGTGTTTCATGATGGACCCTCAGTCAGGGAAGAAAGTTTGCTATGTGCAGTTCCCTCAAAGGTTCGACGGGATTGATCGGCATGATAGATACTCAAATCGGAATGTTGTGTTTTTCGACATCAACATGAAAGGATTGGATGGCATACAAGGGCCGATTTACGTTGGAACTGGGTGCGTCTTCCGAAGACAAGCGCTATATGGATACGATGCTCCGGTGAAGGAGAAGCCTCCGAGCAAAACATGCAATTGTTTGCCAAAATGGTGTTGTCTTTGCTGTGGATCTAGGAAGAGCAAGGTGGGAAGAAATAAAAACGAGAAAAAGAAGAAGATGAAGCAGAGAGAAGCTTCGAAACAAATACATGCACTTGAAAAGATCGAAGAGGGAATCGAAGGCAAGGACGCAGTTTCTAGATCTTCTCCTCCCGAAACAACCCTGATAAAATTACAGAAGAAGTTTGGTCAATCTCCCGTTTTTGCTGCTTCGACAGTATTGGAAAACGGCAGAGTTTTTCACGAAATCAGCCCGGCATCGCTCTTGAGCGAAGCCATTCAAGTGATCAGTTGTGGTTACGAAGATAAGACCGAATGGGGAAAAGAGGTCGGCTGGATTTACGGCTCGGTGACTGAGGATATTCTGACTGGTTTTAAGATGCACTGCCATGGATGGCGATCGGTGTATTGCATACCTCGTCGACCTGCTTTCAAAGGGTCGGCTCCTATTAACCTCTCTGATCGTTTGCACCAAGTTCTTCGGTGGGCCCTCGGGTCCGTCGAGATTTTCTTGAGCAAGCACTGTCCGATTTGGTATGGCTATGGAGGTGGTTTAAAATGGTTGGAGCGATTCTCGTATATAAATTCAGTCGTTTATCCTTGGACCTCCATCCCCTTGCTTGTCTATTGCAGCCTTCCGGCCATCTGTCTCCTAACCGGAAAATTTATCGTTCCCGAGATCAGCAACTATGCGAGTCTAATCTTCATAGGACTATTTGTATCCATAGCTGCAACCGGAATCCTCGAAATGCAATGGGGCGGGGTCGGAATCGATGACTGGTGGAGAAATGAGCAGTTTTGGGTGATCGGAGGCGTTTCCTCCCACCTCTTTGCTCTATTTCAGGGCCTCCTCAAAGTTTTGGCCGGAGTCAACACAAATTTCACTGTCACCTCCAAAGCGGCTGACGACGGAGAATTCTCCGAGCTCTACATATTCAAATGGACGTCTCTTCTGATCCCGCCCATGACCCTGCTCATCTTGAACATTGTCGGCGTGGTGGTTGGAATCTCCAACGCCATAAACAATGGCTACAACACGTGGGGCCCACTTTTCGGAAGGCTGTTCTTCGCATTCTGGGTCATAATCCACCTCTACCCCTTCCTCAAGGGATTGCTAGGTAGACAAGATAGATTGCCAACCATCATAGTTGTTTGGTCAATTTTACTGGCCTCAATTTTGACTCTTATGTGGGTGAGAGTCAACCCATTTGTGTCAAAAGATGGCCCTGTTTTAGAAGTTTGTGGGTTGAACTGTGATGATGTTTGA 3303 45.53 MDAGGRLIAGSHNRNEFVLINAEENGRIMSVKELSGQVCHICGDEIEIAFDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGKAFSFFFFQNSYSPRVEGDEEEDDIDDLDNEFDYETTGSQHGSEALFSSRYNTVRSSSGIPSHAENKSSTAPTEIPLLTYGEKDSDISTDQHALIVPPFIDNGNRVHFMPSSDRSISLQSRPMVPNKDIAVYGYGSVAGKDRMDEWKRRQNDKLQVVKHHDENDLDYSDIPMMDEGRQPLSRKLPISSSKINPYRLIIILRLVIISFFFHYRLRHPVHDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELANVDIFVSTVDPTKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETTAFARKWVPFCKKFNIEPRAPEWYFCQKIDYLKNKVHPAFVRERRAMKREYEEFKVKINGLVGMAQKVPEEGWTMQDGTPWPGNLVRDHPGMIQVFLGENGVRDCDGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKAIREAMCFMMDPQSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKEKPPSKTCNCLPKWCCLCCGSRKSKVGRNKNEKKKKMKQREASKQIHALEKIEEGIEGKDAVSRSSPPETTLIKLQKKFGQSPVFAASTVLENGRVFHEISPASLLSEAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPRRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSKHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFIGLFVSIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYIFKWTSLLIPPMTLLILNIVGVVVGISNAINNGYNTWGPLFGRLFFAFWVIIHLYPFLKGLLGRQDRLPTIIVVWSILLASILTLMWVRVNPFVSKDGPVLEVCGLNCDDV 1100
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12145522 12150823 + Bma017399.1 Bma03g01040 79713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01040 1100 Pfam Cellulose synthase 367 1086 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bma03g01040 1100 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1097 - -
Bma03g01040 1100 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bma03g01040 1100 Pfam Zinc-binding RING-finger 30 117 IPR027934 -
Bma03g01040 1100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 124 IPR013083 -
Bma03g01040 1100 SUPERFAMILY RING/U-box 26 123 - -
Bma03g01040 1100 SUPERFAMILY Nucleotide-diphospho-sugar transferases 376 911 IPR029044 -
Bma03g01040 1100 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bma03g01040 1100 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1097 - -
Bma03g01040 1100 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 520 659 IPR029044 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01040 Bma06g00533 BCT
Bma03g01040 Bma06g00089 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01040 Bma-Chr3:12145522 Bma04g00063 Bma-Chr4:561763 0 dispersed
Bma03g01040 Bma-Chr3:12145522 Bma06g00533 Bma-Chr6:27321590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01040 K10999 - rcu:8273696 1897.09