Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01049 ATGGCGTCCATGTCCAACCTTGGCTTGTTCGATACCCAAGATGCTGCTAAACACACGGCTTGCTTTTCTTTTCCTCCAAATGCACCGTTTTCTTCGATGGGTTTTCATCAATCTCTCAAACCCTCACCTAATAATATTATATCTTCTTCTGAAACCCTAATTTCATCGGCCACGCTTGATCTGATCAAGCATAGAGAAGAAGAAAACTCGTATGGATTTGGAGGAGCAGAACTGCTTCCTTTACGCAAATCAACTGCAAATCATTTCTGGCCATTTGGAGAGGTGGGTGAATGTTTAAACGGTAAAAGAAATGGAGGGGACGATCATAATCTGGGCGTAAATTCGATGAAGATGAAGAAGATAAAGGTGAGGAGGAAGGTGAGAGAGCCTAGGTTTTGTTTCAAGACCATGAGCGATGTAGATGTGCTTGATGATGGTTACAAATGGAGGAAATACGGACAAAAAGTGGTAAAGAACACACAGCATCCCAGGAGTTACTACCGATGCACTCAGGCCAACTGTCGGGTAAAAAAACGGGTGGAGCGACTGGCTGAAGATCTGAGAATGGTGATCACGACGTACGAGGGGCGACACCCCCATTCTCCGTCTCAAGAATTGGAAGATTCACAAGCTCCTTCTCATATGAACACTTTCTTATGGTAG 663 44.34 MASMSNLGLFDTQDAAKHTACFSFPPNAPFSSMGFHQSLKPSPNNIISSSETLISSATLDLIKHREEENSYGFGGAELLPLRKSTANHFWPFGEVGECLNGKRNGGDDHNLGVNSMKMKKIKVRRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQANCRVKKRVERLAEDLRMVITTYEGRHPHSPSQELEDSQAPSHMNTFLW 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12636146 12637653 - Bma017416.1 Bma03g01049 79722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01049 220 SUPERFAMILY WRKY DNA-binding domain 135 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma03g01049 220 MobiDBLite consensus disorder prediction 205 220 - -
Bma03g01049 220 Pfam WRKY DNA -binding domain 144 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma03g01049 220 SMART WRKY_cls 143 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma03g01049 220 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 44 214 IPR044810 GO:0003700
Bma03g01049 220 MobiDBLite consensus disorder prediction 197 220 - -
Bma03g01049 220 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 44 214 - -
Bma03g01049 220 ProSiteProfiles WRKY domain profile. 138 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma03g01049 220 Gene3D WRKY domain 130 196 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01049 Bma-Chr3:12636146 Bma06g01363 Bma-Chr6:50485176 3.66E-49 dispersed
Bma03g01046 Bma-Chr3:12512279 Bma03g01049 Bma-Chr3:12636146 1.92E-119 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57064 PF03106 WRKY 4.30E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01049 - - tcc:18611706 267.7