Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01058 ATGGCGTTGCGGAGAGATCTTTCCCACCGTCTCCTTGACCTCTTTAAATTATCTAACCGATGCCTGAAGAATTGCCGCATCTACTCCTCCGTGCTTCGCCCCGCAACTCCTGACTCCAACAAAACCGGCATCCCTCCTCCCGATCCCGGAGATAAGCGATTTTTCCTCTTTGGGCAGGAGATAGGATCGTCTGCATTCCGAGATAACCTGTTGGGAACGCTTAAATCCATGGGGGTTGGTGGGGAAAGGATCCGGCCAAACCCAGCGAGATTGACGGCAGATGATGTGAGGAAGGTGCTTAGGGCGGCCCAACTGGAAACGGTGAAATGGAAGCTTAGAGAGGTTGGGAAAACGTGGATACCGCATTCCGAGTTTATTAGGATATGCGGACAAGGATGCTCTGACCCTGATGGTGTTCACCGGTTGGCCAAATCGCTCGATGAGTCTGGAACGGTGATCATTGTGGGCAATCTGGTCGTGCTTAGACCCGAACAGGTAGCTAAAGTGGTAGAGGATCTCATTCCCATGGCTGGAGACGATCCAAGAAGAAGGGAGTTGGAAGAAATGGAGAAGGAGAAAAGCAAAATCGACTCCAAGGCTGAGTCACTGGTCCGGCGAGAACTATGGTATGGACTAGGTTTCCTTGCTCTGCAGACATTCGCGTGCATGAGGCTTACTTTTTGGGAGCTTTCATGGGATGTAATGGAGCCTATCTGCTTCTTCCTCACCTCTCTCTACTGCATGGGCAGCTACGGTTTCTTCCTCGTCACTTCAAGAGAGCCTTCCTTTGTGGGCCTCTTTCAGAGCCGATTAAGCTCCAAGCAGAGCCGTTTGATAAAACTTCATAACTTCGACATTGTGAGGTACAATCAACTCCGTCAACTTTATCACGATAACCAGTCATCATCCAATCCGGGGCATTCATCAATGGCTTCTTTTCTGTTTGGTAGCCGAGAAAATATTTAA 966 49.69 MALRRDLSHRLLDLFKLSNRCLKNCRIYSSVLRPATPDSNKTGIPPPDPGDKRFFLFGQEIGSSAFRDNLLGTLKSMGVGGERIRPNPARLTADDVRKVLRAAQLETVKWKLREVGKTWIPHSEFIRICGQGCSDPDGVHRLAKSLDESGTVIIVGNLVVLRPEQVAKVVEDLIPMAGDDPRRRELEEMEKEKSKIDSKAESLVRRELWYGLGFLALQTFACMRLTFWELSWDVMEPICFFLTSLYCMGSYGFFLVTSREPSFVGLFQSRLSSKQSRLIKLHNFDIVRYNQLRQLYHDNQSSSNPGHSSMASFLFGSRENI 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 12801962 12803721 + Bma017427.2 Bma03g01058 79731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01058 321 MobiDBLite consensus disorder prediction 299 321 - -
Bma03g01058 321 PANTHER CALCIUM UNIPORTER PROTEIN 1, MITOCHONDRIAL 1 305 - -
Bma03g01058 321 Pfam Mitochondrial calcium uniporter 140 292 IPR006769 -
Bma03g01058 321 Coils Coil 186 206 - -
Bma03g01058 321 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 1 305 IPR039055 GO:0051560
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01058 K20858 MCU; calcium uniporter protein, mitochondrial - jre:108995371 319.316
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01058 Bma09g00354 CCT
Bma03g01058 Bma09g00354 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01058 Bma-Chr3:12801962 Bma06g00559 Bma-Chr6:29814542 5.79E-129 dispersed
Bma03g01058 Bma-Chr3:12801962 Bma03g01066 Bma-Chr3:12971486 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g912 . . Bda04g00320 Bda10g00321 . . Bma09g00354 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1347 . Lsi01g01053 . . . . . . . . Bpe06g00247 Bma03g01058 . Sed01g0082 . . . . . . . . Bhi10g02232 Tan07g1029 Cmetu11g0018 . Hepe10g0829 . . . . . . . . . . . Chy02g00973 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021521 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01058 Bma_Chr03 FPKM 1.791457 1.891881 1.775598 3.38137 2.548987 2.643258 2.301268 3.418528 3.765991 4.775918