Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g01075 | TTAAATTTGAAAGTTACCACTCTAAGATCGGAGATGGAAAGCGGGTTTGGACAATCAACAAGCGAGCCACCTCAAAATCCGTCTTGTTCAAGCAATAATAGCAATGATGCAGGCGATTTTGAGTGCAATATTTGCTTTGAATTGCCTCAAGACCCCATTGTTACTCTCTGTGGACATCTCTTTTGCTGGCCATGCTTGTACAGATGGCTGCATCATCATTCACATTATCAAGAATGCCCAGTTTGTAAGGCCCTTGTTCAGGAAGATAAATTGGTTCCTCTCTACGGCAGGGGCAAAACTCAGACTGATCCGAGATCGAAATCATATCCTCAGTTTGATATTCCCAATCGCCCGGCTGGTCAACGACCAGAAACCGCTCTGCCACCAATGTCAAACCAGTTCAGTAATTACGGGATTGGATTAACAGGTGGTTTTGCACCAGCAACTACTGCGAGAATCGGTAACTTCCCATTGGCCACTGCTGTCGGTGGTTTGATACCTTCTTTATTTAATATCCAGTTTCATGGATTCTCTGATGCAACTGTTTATGGAACAACTTCGGGTTTTCCATATCCTTACAATGCATATCATGGGGGTCATGCTCACGGATTTCCTCACCCGCCAAGACGAGGACAAGCCGACAGCTTTTTGAAGAATCTTCTTTTATTGATTGCTGTCTTTGTGATTCTTGCTCTGCTTTGTTGGTGA | 708 | 44.07 | LNLKVTTLRSEMESGFGQSTSEPPQNPSCSSNNSNDAGDFECNICFELPQDPIVTLCGHLFCWPCLYRWLHHHSHYQECPVCKALVQEDKLVPLYGRGKTQTDPRSKSYPQFDIPNRPAGQRPETALPPMSNQFSNYGIGLTGGFAPATTARIGNFPLATAVGGLIPSLFNIQFHGFSDATVYGTTSGFPYPYNAYHGGHAHGFPHPPRRGQADSFLKNLLLLIAVFVILALLCW | 235 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13125784 | 13126491 | + | Bma017447.1 | Bma03g01075 | 79748 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g01075 | 235 | MobiDBLite | consensus disorder prediction | 9 | 32 | - | - | |
Bma03g01075 | 235 | MobiDBLite | consensus disorder prediction | 96 | 123 | - | - | |
Bma03g01075 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 42 | 83 | IPR001841 | - | |
Bma03g01075 | 235 | Pfam | Zinc finger, C3HC4 type (RING finger) | 40 | 87 | - | - | |
Bma03g01075 | 235 | SUPERFAMILY | RING/U-box | 38 | 95 | - | - | |
Bma03g01075 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 13 | 234 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 | |
Bma03g01075 | 235 | CDD | RING-HC_AtRMA_like | 40 | 84 | - | - | |
Bma03g01075 | 235 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 13 | 234 | - | - | |
Bma03g01075 | 235 | SMART | ring_2 | 42 | 82 | IPR001841 | - | |
Bma03g01075 | 235 | ProSitePatterns | Zinc finger RING-type signature. | 57 | 66 | IPR017907 | - | |
Bma03g01075 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 98 | IPR013083 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g01075 | Bma-Chr3:13125784 | Bma15g00848 | Bma-Chr15:21720597 | 5.55E-117 | dispersed | |
Bma14g01434 | Bma-Chr14:27399667 | Bma03g01075 | Bma-Chr3:13125784 | 5.51E-07 | dispersed | |
Bma03g01075 | Bma-Chr3:13125784 | Bma01g02302 | Bma-Chr1:80598059 | 9.81E-92 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g01075 | K10666 | - | mnt:21392517 | 370.163 |