Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01075 TTAAATTTGAAAGTTACCACTCTAAGATCGGAGATGGAAAGCGGGTTTGGACAATCAACAAGCGAGCCACCTCAAAATCCGTCTTGTTCAAGCAATAATAGCAATGATGCAGGCGATTTTGAGTGCAATATTTGCTTTGAATTGCCTCAAGACCCCATTGTTACTCTCTGTGGACATCTCTTTTGCTGGCCATGCTTGTACAGATGGCTGCATCATCATTCACATTATCAAGAATGCCCAGTTTGTAAGGCCCTTGTTCAGGAAGATAAATTGGTTCCTCTCTACGGCAGGGGCAAAACTCAGACTGATCCGAGATCGAAATCATATCCTCAGTTTGATATTCCCAATCGCCCGGCTGGTCAACGACCAGAAACCGCTCTGCCACCAATGTCAAACCAGTTCAGTAATTACGGGATTGGATTAACAGGTGGTTTTGCACCAGCAACTACTGCGAGAATCGGTAACTTCCCATTGGCCACTGCTGTCGGTGGTTTGATACCTTCTTTATTTAATATCCAGTTTCATGGATTCTCTGATGCAACTGTTTATGGAACAACTTCGGGTTTTCCATATCCTTACAATGCATATCATGGGGGTCATGCTCACGGATTTCCTCACCCGCCAAGACGAGGACAAGCCGACAGCTTTTTGAAGAATCTTCTTTTATTGATTGCTGTCTTTGTGATTCTTGCTCTGCTTTGTTGGTGA 708 44.07 LNLKVTTLRSEMESGFGQSTSEPPQNPSCSSNNSNDAGDFECNICFELPQDPIVTLCGHLFCWPCLYRWLHHHSHYQECPVCKALVQEDKLVPLYGRGKTQTDPRSKSYPQFDIPNRPAGQRPETALPPMSNQFSNYGIGLTGGFAPATTARIGNFPLATAVGGLIPSLFNIQFHGFSDATVYGTTSGFPYPYNAYHGGHAHGFPHPPRRGQADSFLKNLLLLIAVFVILALLCW 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13125784 13126491 + Bma017447.1 Bma03g01075 79748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01075 235 MobiDBLite consensus disorder prediction 9 32 - -
Bma03g01075 235 MobiDBLite consensus disorder prediction 96 123 - -
Bma03g01075 235 ProSiteProfiles Zinc finger RING-type profile. 42 83 IPR001841 -
Bma03g01075 235 Pfam Zinc finger, C3HC4 type (RING finger) 40 87 - -
Bma03g01075 235 SUPERFAMILY RING/U-box 38 95 - -
Bma03g01075 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 234 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bma03g01075 235 CDD RING-HC_AtRMA_like 40 84 - -
Bma03g01075 235 PANTHER RING ZINC FINGER PROTEIN-RELATED 13 234 - -
Bma03g01075 235 SMART ring_2 42 82 IPR001841 -
Bma03g01075 235 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Bma03g01075 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 98 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01075 Bma-Chr3:13125784 Bma15g00848 Bma-Chr15:21720597 5.55E-117 dispersed
Bma14g01434 Bma-Chr14:27399667 Bma03g01075 Bma-Chr3:13125784 5.51E-07 dispersed
Bma03g01075 Bma-Chr3:13125784 Bma01g02302 Bma-Chr1:80598059 9.81E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01075 K10666 - mnt:21392517 370.163