Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01077 ATGGGTTGGCTAACTAAAATTCTTAAAGGTTCTAGCCACAAAATCGCAAAAGGACAATATCATAGCAAATATGAAGATGAGGGAATTTGGGATGAACCTCATCATTCTGTGGAGGAATTGACAGAATTTGATCAAGGAGAAGTTGATTATGCTATTGCACTATCCCTTGCAGAAGAGGATGAAAAAGGCATGGAGGAAGAAGCTAATAAAAGGTCTATACCAGAAGAAGATAAAACAAGTACATCAGCAGAAGAAGATCCAAAAAGGGCAGTTGCAGAAGACGATCAAAAAGGGAAAAAAGTGATAATTCCTGAAGAATCCGAATCAGATGAAGATGAGCCAGTTGCTAAGGTTCAACTAGAAGAAGATGAACAGCTTGCGAAGGCACTTCAAGAAAGCTTAAACGTGTCTCCCCCTAGATACAATTCTGGAAACTTTTTCCAACCATATCCTTTCTTTCCAGCTGGATATAGAATTTGTGCTGGCTGCAACACTGGAATTGGTCATGGACGATATTTAAATTGTATGGATGCTGTTTGGCATCCAGAATGTTTTCTTTGTCATGCTTGCAATCAGCCAATCACTGATTCTGAGTTTTCCGTGTCTGGAAGTCGCCCTTATCATAAATCATGCTATAAGGAGAAACATCACCCCAGATGTGATGTTTGCAAGAATTTTATCCCTACAAATTCTGCTGGTTTAGTTGAGTATAGAGCACATCCATTTTGGCATCAGAAGTACTGCCCCTCCCATGAACGAGATGGAACTCCTCGATGTTGTAGCTGTGAAAGAATGGAGCCAAGAGACGCAAATTATCTGATTCTTGATGATGGGAGAAAGCTATGTTTAGAGTGTTTAGATTCTTCGATCATGGATACTCATGAGTGCCAACCTCTATACCTTGAAATTCTAGATTTTTATGAAGGCTTGAATATGAAGGTGGAACAACAAATTCCGATGCTCTTGGTTGAAAGACAAGCATTAAACGAGGCACTTGAGGGTGAAAAAAATGGTCATCATCACATGCCCGAGACCAGAGGACTCTGCTTGTCCGAAGAACAGACAGTTGCCACAATATCAAGGAGACCAAGAATTGGGGCAGGTCACAGAATCTTAGACATGTTTACAGAGCCATATAGGTTGATCCGTCGATGTGAAGTTACGGCAATTCTTGTTTTATTTGGGCTTCCAAGGTTGTTGACCGGATCGATTTTGGCTCACGAGATGATGCATGCATGGCTAAGGCTCAAAGGTTATCCCAACTTAAGTCCCGAGGTTGAAGAAGGTATTTGCCAAGTGTTGGCTCATATGTGGCTAGACTCGGAGATGTATTCCAGCCCTGGAAACGACTTGGCATCGTCATCGTCATCATCTTCATCGTCATCACCTTCCTCGTCTTCTGTTCAAGTTGCTTCAAAGAAGGGTGTTCGATCGGAGCCTGAGAAGAAACTATGTGAGTTTTTCAAACACCAAATAGAGTCTGATTCGTCATCTGCTTATGGAGATGGATTTAGGATAGGCAATAAGGCTGTCTCCAAATATGGTCTTAGGAGGACCCTTGACCACATTAAGATGACTGGTACCTTTCCTTTTTGA 1596 41.67 MGWLTKILKGSSHKIAKGQYHSKYEDEGIWDEPHHSVEELTEFDQGEVDYAIALSLAEEDEKGMEEEANKRSIPEEDKTSTSAEEDPKRAVAEDDQKGKKVIIPEESESDEDEPVAKVQLEEDEQLAKALQESLNVSPPRYNSGNFFQPYPFFPAGYRICAGCNTGIGHGRYLNCMDAVWHPECFLCHACNQPITDSEFSVSGSRPYHKSCYKEKHHPRCDVCKNFIPTNSAGLVEYRAHPFWHQKYCPSHERDGTPRCCSCERMEPRDANYLILDDGRKLCLECLDSSIMDTHECQPLYLEILDFYEGLNMKVEQQIPMLLVERQALNEALEGEKNGHHHMPETRGLCLSEEQTVATISRRPRIGAGHRILDMFTEPYRLIRRCEVTAILVLFGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEMYSSPGNDLASSSSSSSSSSPSSSSVQVASKKGVRSEPEKKLCEFFKHQIESDSSSAYGDGFRIGNKAVSKYGLRRTLDHIKMTGTFPF 531
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13178619 13184372 - Bma017450.1 Bma03g01077 79750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01077 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 185 - -
Bma03g01077 531 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 244 - -
Bma03g01077 531 Gene3D Cysteine Rich Protein 155 219 - -
Bma03g01077 531 MobiDBLite consensus disorder prediction 449 475 - -
Bma03g01077 531 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 121 140 IPR003903 -
Bma03g01077 531 MobiDBLite consensus disorder prediction 449 473 - -
Bma03g01077 531 ProSitePatterns LIM zinc-binding domain signature. 160 194 IPR001781 -
Bma03g01077 531 Pfam Protein DA1 309 526 IPR022087 -
Bma03g01077 531 PANTHER PROTEIN DA1-RELATED 2 1 530 IPR045218 -
Bma03g01077 531 SMART lim_4 159 211 IPR001781 -
Bma03g01077 531 MobiDBLite consensus disorder prediction 56 115 - -
Bma03g01077 531 ProSiteProfiles LIM domain profile. 158 218 IPR001781 -
Bma03g01077 531 SMART uim 43 62 IPR003903 -
Bma03g01077 531 SMART uim 121 140 IPR003903 -
Bma03g01077 531 MobiDBLite consensus disorder prediction 56 106 - -
Bma03g01077 531 CDD LIM_DA1 160 212 - -
Bma03g01077 531 CDD LIM 187 262 - -
Bma03g01077 531 Pfam LIM domain 160 215 IPR001781 -
Bma03g01077 531 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 530 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01077 - - - jre:108997551 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01077 Bma-Chr3:13178619 Bma05g00105 Bma-Chr5:3318332 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g901 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda14g01211 . . Bma03g01077 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001147 2 4 2 2 2 2 2 2 2 2 2 2 4 2 2 3 2 6 3 2 2 2 2 2 2 3 2 9 2 3 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57065 PF12315 DA1-like 1.10E-102 CL0126 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01077 Bma_Chr02 FPKM 176.644058 176.989532 246.635651 243.101486 170.874664 202.621063 187.507904 192.797043 202.217499 211.496185
Bma03g01077 Bma_Chr03 FPKM 312.196136 325.106415 194.577744 185.449265 283.613464 350.935516 279.064453 224.534409 212.930328 214.093689
Bma03g01077 Bma_Chr07 FPKM 328.141541 353.829712 282.13739 269.74881 280.89621 389.189514 279.981171 381.262848 369.092651 346.410278