Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01078 ATGGCTAATTCCCGGCAACCAAATCTGCAGCCGCCATCAACCGGCCTGACCACCGACTGGTATGGAGAGAGATCAATACAGTTGGGTGACTCAAAGACCCATTCTATCATAACTCACAACCACCATAATCCGATTACTGCCATTAATGCAGACCCAGTAGCTGCCATGCAGCTTTTTCTGATGAATCCGCAGCCGAGATCGTCGTCTTCTACTCATCCTCCTCCATCAACTTCCTCTACCCTCCACATACTTCAAGGTTTCGCTTCTTCTGATGCTCCAACAGAAGCAACTTCTGGTCAATTCTCATGGCTTCCTGACGGTACTCATGGCGGAACAGCTCGATCTTCTTCCCATGGCCTTTCGTTATCCTTATCGTCTTCGTTGCAACAACTAGAAGCATCAAAGGCTGATGATTTCAGAATGGGAGATACTGGTAACTTACTGTATTACAATCACGGTGGAAGTGGAAGTGGTCCGACCCAGCAAGTTCATTTTGGGTTTGGGTCATCGTTATCCATCGTCAATGTCCTGAGGAATTCAAAGTACGCAAGGGCTACCCAAGAATTGTTGGAAGAATTTTGCAGCGTCGGTAGAGGTCAGTTTAAAAAGAGCAAATTAGGTCGGAATAACTCCGACGTTAGCTCGAATCCAGCAATTTCCGGTGCCGGCGGCTCTTCATCTTCTTCAAAGGACCTTCCTCCATTGTCCGCTTCCGATCGGATTGAACATCAAAGAAGGAAGGTGGATAGGCGATACAGCCAATACTGCGAACAAATGCAAATGATGGTTAATTCGTTTGATTTGGTGATGGGGTTTGGGGCTGCAGCCCCATACACAATGCTAGCACAGAAGGCGATGTCACGCCATTTCCGGTGCCTGAAAGACGGGATAACGGCGCAGTTGAAGCACAGCTGCGATTTGCTGGGGGAGAAAGACGGCGGGAGAGGGTCGGGAATCACGAAGGGGGAGACTCCGAGACTGAAAATGCTCGAGCAAAGCTTAAGGCAGCAAAGAGCTTTTCACCAAATAGGTATGATCGAACAAGAGGCTTGGCGGCCTCAACGTGGTTTGCCTGAACGTTCTGTCAACATTTTGAGATCATGGCTTTTCGAGCATTTTCTTCACCCGTATCCAAGCGACGCAGATAAGCATCAATTGGCAAGACAGACTGGTTTATCAAGAAATCAGGTTAGTACTCTTTTCTTTTTTTTTTTCTTATCAAAAACACAGTCACATTCCACAGTGAAAAAGACACTCTTTGAAACAGAAATATATATATATATATATATATAG 1293 46.25 MANSRQPNLQPPSTGLTTDWYGERSIQLGDSKTHSIITHNHHNPITAINADPVAAMQLFLMNPQPRSSSSTHPPPSTSSTLHILQGFASSDAPTEATSGQFSWLPDGTHGGTARSSSHGLSLSLSSSLQQLEASKADDFRMGDTGNLLYYNHGGSGSGPTQQVHFGFGSSLSIVNVLRNSKYARATQELLEEFCSVGRGQFKKSKLGRNNSDVSSNPAISGAGGSSSSSKDLPPLSASDRIEHQRRKVDRRYSQYCEQMQMMVNSFDLVMGFGAAAPYTMLAQKAMSRHFRCLKDGITAQLKHSCDLLGEKDGGRGSGITKGETPRLKMLEQSLRQQRAFHQIGMIEQEAWRPQRGLPERSVNILRSWLFEHFLHPYPSDADKHQLARQTGLSRNQVSTLFFFFFLSKTQSHSTVKKTLFETEIYIYIYI 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13387749 13390216 + Bma017453.1 Bma03g01078 79751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01078 430 CDD homeodomain 351 397 IPR001356 GO:0003677
Bma03g01078 430 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 401 - -
Bma03g01078 430 MobiDBLite consensus disorder prediction 204 234 - -
Bma03g01078 430 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 2 22 401 - -
Bma03g01078 430 MobiDBLite consensus disorder prediction 203 247 - -
Bma03g01078 430 Gene3D - 357 402 - -
Bma03g01078 430 MobiDBLite consensus disorder prediction 91 118 - -
Bma03g01078 430 Pfam Associated with HOX 176 298 IPR006563 -
Bma03g01078 430 SMART prehox3 171 299 IPR006563 -
Bma03g01078 430 Pfam Homeobox KN domain 368 401 IPR008422 GO:0003677|GO:0006355
Bma03g01078 430 SUPERFAMILY Homeodomain-like 352 401 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01078 Bma09g00348 CCT
Bma03g01078 Bma09g00348 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01078 Bma-Chr3:13387749 Bma09g00348 Bma-Chr9:30200720 1.30E-144 dispersed
Bma03g01078 Bma-Chr3:13387749 Bma14g00602 Bma-Chr14:6539299 3.56E-70 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01078 - - jre:108995343 481.87