Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01098 ATGTCATCGTCGAATTCTCCGTGCGCTGCCTGCAAGGTACGGAGGTGTAAATGCACGCAAAAGTGTGTGTTCGCACCGTATTTTCCACCAGATCAGCCTCAGAAATTCGTAAATGTCCACAACGTGTTCGGCGCAAGCAACGTTGCCAAGCTGCTCAACGAACTCGACGCTAGGCACCGGGAAGACGCAGTCAACTCTCTGGCTTACGAGGCCGAGTTTCGCCTCCGAGACCCAGTCTACGGTTGCGTCGGTCTGATCTCCCTCCTTCAGCACAGACTGAAGCAAACGCAAAGCGATCTCATCAACGCCAAAAAAGAGCTCGCCAGCTACATTGGACCTCAGGCAATGCTTCCTATAATGCAACCTTCAGGGATGATGATGGCGCAACAACAACAACATCCAGGCAATCCTTCGTCTTCCTCCATGATGCCTTATAACATGCAGCCCATGATGAGTATCCCGGCTGGTCCTTCCGGGCAAATGATGATTCGTGAGCCTCACCAACAACAGCAGCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGGCCGCAGCCGTGGCGGCTAGAGAGCAGCAAGATATGTTTAGTGCTTTCGAGGCAAAAGAACAACAAATGGACCCCCGCCATCATCATCCCCAACAGCAGCAGCAAGAGCTTTTACGGTTACATAATGGGTTCGACCCATCTTCGGTATCCGCCAGTGGGTTTAATCAGCTTAACAACGCTTCTGCTTTGTCCCCCTCTTTGGCTCTGGGCACTTTCGATAATGCATACCACCTTCAACCAGAGATTTCAGAACATCCTCACTCCCATTATCATCATCAACAGCAGCAACAGCTTCAGGCTCAGCCTTTGCTCCAACCACAGCAGCAACCACAACCACCTACCCAATCCCAGCTTTTGCAGCAGCAAAAAGCTGATAGCGAGGACGACAGAATCATGGGTCCCTCTGGTTAG 969 51.39 MSSSNSPCAACKVRRCKCTQKCVFAPYFPPDQPQKFVNVHNVFGASNVAKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHRLKQTQSDLINAKKELASYIGPQAMLPIMQPSGMMMAQQQQHPGNPSSSSMMPYNMQPMMSIPAGPSGQMMIREPHQQQQQHQLHQQQLFEAQQLAAAVAAREQQDMFSAFEAKEQQMDPRHHHPQQQQQELLRLHNGFDPSSVSASGFNQLNNASALSPSLALGTFDNAYHLQPEISEHPHSHYHHQQQQQLQAQPLLQPQQQPQPPTQSQLLQQQKADSEDDRIMGPSG 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 13857908 13858876 - Bma017478.1 Bma03g01098 79771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01098 322 MobiDBLite consensus disorder prediction 278 308 - -
Bma03g01098 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 307 - -
Bma03g01098 322 MobiDBLite consensus disorder prediction 272 322 - -
Bma03g01098 322 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 307 - -
Bma03g01098 322 Coils Coil 86 106 - -
Bma03g01098 322 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Bma03g01098 322 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01098 Bma-Chr3:13857908 Bma06g00422 Bma-Chr6:15286261 2.01E-132 dispersed
Bma03g01098 Bma-Chr3:13857908 Bma06g00414 Bma-Chr6:14605250 1.85E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57067 PF03195 LOB 2.80E-38 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01098 - - jre:109018950 339.347