Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g01098 | ATGTCATCGTCGAATTCTCCGTGCGCTGCCTGCAAGGTACGGAGGTGTAAATGCACGCAAAAGTGTGTGTTCGCACCGTATTTTCCACCAGATCAGCCTCAGAAATTCGTAAATGTCCACAACGTGTTCGGCGCAAGCAACGTTGCCAAGCTGCTCAACGAACTCGACGCTAGGCACCGGGAAGACGCAGTCAACTCTCTGGCTTACGAGGCCGAGTTTCGCCTCCGAGACCCAGTCTACGGTTGCGTCGGTCTGATCTCCCTCCTTCAGCACAGACTGAAGCAAACGCAAAGCGATCTCATCAACGCCAAAAAAGAGCTCGCCAGCTACATTGGACCTCAGGCAATGCTTCCTATAATGCAACCTTCAGGGATGATGATGGCGCAACAACAACAACATCCAGGCAATCCTTCGTCTTCCTCCATGATGCCTTATAACATGCAGCCCATGATGAGTATCCCGGCTGGTCCTTCCGGGCAAATGATGATTCGTGAGCCTCACCAACAACAGCAGCAACACCAGCTTCATCAGCAACAGTTGTTTGAGGCTCAGCAATTGGCCGCAGCCGTGGCGGCTAGAGAGCAGCAAGATATGTTTAGTGCTTTCGAGGCAAAAGAACAACAAATGGACCCCCGCCATCATCATCCCCAACAGCAGCAGCAAGAGCTTTTACGGTTACATAATGGGTTCGACCCATCTTCGGTATCCGCCAGTGGGTTTAATCAGCTTAACAACGCTTCTGCTTTGTCCCCCTCTTTGGCTCTGGGCACTTTCGATAATGCATACCACCTTCAACCAGAGATTTCAGAACATCCTCACTCCCATTATCATCATCAACAGCAGCAACAGCTTCAGGCTCAGCCTTTGCTCCAACCACAGCAGCAACCACAACCACCTACCCAATCCCAGCTTTTGCAGCAGCAAAAAGCTGATAGCGAGGACGACAGAATCATGGGTCCCTCTGGTTAG | 969 | 51.39 | MSSSNSPCAACKVRRCKCTQKCVFAPYFPPDQPQKFVNVHNVFGASNVAKLLNELDARHREDAVNSLAYEAEFRLRDPVYGCVGLISLLQHRLKQTQSDLINAKKELASYIGPQAMLPIMQPSGMMMAQQQQHPGNPSSSSMMPYNMQPMMSIPAGPSGQMMIREPHQQQQQHQLHQQQLFEAQQLAAAVAAREQQDMFSAFEAKEQQMDPRHHHPQQQQQELLRLHNGFDPSSVSASGFNQLNNASALSPSLALGTFDNAYHLQPEISEHPHSHYHHQQQQQLQAQPLLQPQQQPQPPTQSQLLQQQKADSEDDRIMGPSG | 322 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 13857908 | 13858876 | - | Bma017478.1 | Bma03g01098 | 79771 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g01098 | 322 | MobiDBLite | consensus disorder prediction | 278 | 308 | - | - | |
Bma03g01098 | 322 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 307 | - | - | |
Bma03g01098 | 322 | MobiDBLite | consensus disorder prediction | 272 | 322 | - | - | |
Bma03g01098 | 322 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 36-LIKE | 1 | 307 | - | - | |
Bma03g01098 | 322 | Coils | Coil | 86 | 106 | - | - | |
Bma03g01098 | 322 | Pfam | Lateral organ boundaries (LOB) domain | 7 | 103 | IPR004883 | - | |
Bma03g01098 | 322 | ProSiteProfiles | LOB domain profile. | 6 | 107 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g01098 | Bma-Chr3:13857908 | Bma06g00422 | Bma-Chr6:15286261 | 2.01E-132 | dispersed | |
Bma03g01098 | Bma-Chr3:13857908 | Bma06g00414 | Bma-Chr6:14605250 | 1.85E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57067 | PF03195 | LOB | 2.80E-38 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g01098 | - | - | jre:109018950 | 339.347 |