Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01107 ATGTGGGATCTGAATGACTCGCCCGATCAGAAAAAAGACACTGAATCCGACGGCTGTTCTTCCCCCAAAACTTCGATCGACGGGGACGGGGACGGGGACGGCGACAAGGGGAAACGGGTAGGATGCTTTTCGAATTCAAGTTCTTCTGCAGTTGTGATTGAAGACGGATCCGACGAAGACTGCGGCGATAAGGAAGCGGTGGCCGAGAAGCTTAGCCGCGGAAGCAAGGTGTTTGGGTGTTCAACACCTCAGGACTATATGGAAACGGATGACCCGGTGACCCGGCAGTTTTTCCCGGTGGAAGACTCCCAAGTCGGCGCTTCTCCGGAGGGAGGTGGCGGTGGCGGTGCTTCGTTCCCTCGGGCTCGCTGGGTTGGGGTGAAATTCTGTCAGACAGAACCTCTCGTAGATACTAGAACGTCAACTGAGACGTCGCTGACGATGAAAAAGAGCCGCCGAGGGCCGAGGTCCCGTAGCTCTCAGTATCGTGGCGTCACGTTCTACCGAAGAACCGGCCGATGGGAATCCCATATCTGGTTAGTTCTTCCTTCTCACACTGAAACTCATCTCCAAATTTCTTGCAGGGCTTACGATAGAGCAGCCATTAAATTCCGAGGAACAGAAGCTGACATAAATTTCAGCATCTATGACTATGAAGAAGACTTGAAACAAATGAGGAACTTAACAAAGGAAGAATTTGTGCATGTTCTTCGCCGACAAAGCACTGGGTTTCCGAGAGGAAGCTCCAAGTACAGAGGCGTAACCCTACACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAGTTTCTTGGCAAAAAGTACGTTTATTTGGGTTTGTTCGATGCCGAGATTGAAGCTGCAAAGGCTTATGATAAAGCAGCCATTAAATGTAATGGTAAAGACGCTGTCACCAACTTTGATCCAAGCATATACGGGACAGAACTCGACGGAAAAGAATCGTCGAATAATGGAGTGGAGCACAATCTTGATCTGAGTTTAGGGAATTCAAGCTCGAATCCAAGCAGCTTGCCCCCAGAGAATAATGGCAGAAGCTCTGCACATTTATCTGCATCTTTTCCATTTAAATCAGATTGGCAAAATCAAGGATTTAGACCACAGAGGGAGAAGCCTCGAGACTCAAACCATGCAGCTTCTCGGCCAGACCCACCATCAACCTCTTGCTTACAGCACTCAAGGGCTAAATCCACAAAATTATCAGGTGGGAAAGTTGAAAATTTTCAATCTTTTTTAAATCTAATCTTGATGGCTACAAAGTTTAAAACTGTACTCTTATTTTTGCAGACTCGGTTTTTAACAACTAGCAGCAATGGAGGTAGAGTAGGAAGTGATCTTTCACTGTCTATTAATGACCAGCAATGGCGATCTAGTTCTTCTCAACAGTTTGCACTTGCTGCAGCATCATCAGGATTCCCACCCCAGATCAGATCGACTTTCCAGAATCATTTTCTGCATAAAAATGGATTGAACTTTCTCGTAAGACCCTCTTAA 1509 47.12 MWDLNDSPDQKKDTESDGCSSPKTSIDGDGDGDGDKGKRVGCFSNSSSSAVVIEDGSDEDCGDKEAVAEKLSRGSKVFGCSTPQDYMETDDPVTRQFFPVEDSQVGASPEGGGGGGASFPRARWVGVKFCQTEPLVDTRTSTETSLTMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLVLPSHTETHLQISCRAYDRAAIKFRGTEADINFSIYDYEEDLKQMRNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDAEIEAAKAYDKAAIKCNGKDAVTNFDPSIYGTELDGKESSNNGVEHNLDLSLGNSSSNPSSLPPENNGRSSAHLSASFPFKSDWQNQGFRPQREKPRDSNHAASRPDPPSTSCLQHSRAKSTKLSGGKVENFQSFLNLILMATKFKTVLLFLQTRFLTTSSNGGRVGSDLSLSINDQQWRSSSSQQFALAAASSGFPPQIRSTFQNHFLHKNGLNFLVRPS 502
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14349161 14351690 - Bma017490.2 Bma03g01107 79780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01107 502 MobiDBLite consensus disorder prediction 385 403 - -
Bma03g01107 502 ProSiteProfiles AP2/ERF domain profile. 161 214 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 MobiDBLite consensus disorder prediction 140 161 - -
Bma03g01107 502 SUPERFAMILY DNA-binding domain 249 309 IPR016177 GO:0003677
Bma03g01107 502 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 MobiDBLite consensus disorder prediction 1 43 - -
Bma03g01107 502 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 SMART rav1_2 161 220 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 500 - -
Bma03g01107 502 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 500 - -
Bma03g01107 502 MobiDBLite consensus disorder prediction 1 18 - -
Bma03g01107 502 Pfam AP2 domain 249 298 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 MobiDBLite consensus disorder prediction 314 403 - -
Bma03g01107 502 MobiDBLite consensus disorder prediction 369 383 - -
Bma03g01107 502 SUPERFAMILY DNA-binding domain 160 215 IPR016177 GO:0003677
Bma03g01107 502 MobiDBLite consensus disorder prediction 315 368 - -
Bma03g01107 502 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Bma03g01107 502 Gene3D AP2/ERF domain 160 216 IPR036955 GO:0003700|GO:0006355
Bma03g01107 502 CDD AP2 161 213 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Bma03g01107 502 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01107 Bma09g00268 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01107 Bma-Chr3:14349161 Bma06g00380 Bma-Chr6:10500226 0 dispersed
Bma08g00963 Bma-Chr8:48627500 Bma03g01107 Bma-Chr3:14349161 1.63E-11 dispersed
Bma03g01107 Bma-Chr3:14349161 Bma07g00126 Bma-Chr7:1983908 6.79E-94 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57068 PF00847 AP2 9.70E-09 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01107 K09284 - tcc:18611171 499.204