Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01111 ATGGATGGGGAAGACGACGCGAGAGAGGGGACGACGAAGAAGAGATCAAAGGATAATCAGAGGCCGTACAAAGGGATTCGAATGAGAAAGTGGGGAAAATGGGTGGCTGAGATTCGAGAACCGAATAAACGCTCCAGACTTTGGCTGGGTTCTTACTCTTCGCCGGTGGCGGCGGCTAGGGCTTACGACACTGCCGTTTTTCATCTAAGGGGCCCATCAGCGCGGCTTAACTTCCCGGAGCTTTTGGCGGCGGAAGAATGGAAGGTTCCCGCCGGAGACGATATGTCGGCCGCTACTATAAGGAAGAAAGCCGCGGAGGTCGGCGCGAGAGTGGATGCCATCGAGAGTTCTCATCAATACGACCGTTCTTCCTCTGGCATGGTGTCTCCGTCGTTGAAGGGCGGGGGTGGGTTTTCGGATCAGGTGGATTTGAACAAGATGCCGGAGCAGGAAGAGTCGGAGGAGGAGACTGGGTAG 477 55.77 MDGEDDAREGTTKKRSKDNQRPYKGIRMRKWGKWVAEIREPNKRSRLWLGSYSSPVAAARAYDTAVFHLRGPSARLNFPELLAAEEWKVPAGDDMSAATIRKKAAEVGARVDAIESSHQYDRSSSGMVSPSLKGGGGFSDQVDLNKMPEQEESEEETG 158
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14395237 14395713 - Bma017496.1 Bma03g01111 79784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01111 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-10 10 154 - -
Bma03g01111 158 MobiDBLite consensus disorder prediction 114 158 - -
Bma03g01111 158 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677
Bma03g01111 158 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Bma03g01111 158 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Bma03g01111 158 Pfam AP2 domain 23 71 IPR001471 GO:0003700|GO:0006355
Bma03g01111 158 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700|GO:0006355
Bma03g01111 158 CDD AP2 23 81 IPR001471 GO:0003700|GO:0006355
Bma03g01111 158 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700|GO:0006355
Bma03g01111 158 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Bma03g01111 158 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 154 - -
Bma03g01111 158 MobiDBLite consensus disorder prediction 1 23 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01111 Bma09g00267 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02267 Bma-Chr1:79830359 Bma03g01111 Bma-Chr3:14395237 5.18E-50 dispersed
Bma03g01111 Bma-Chr3:14395237 Bma09g00267 Bma-Chr9:14634594 2.99E-58 dispersed
Bma03g01111 Bma-Chr3:14395237 Bma01g00656 Bma-Chr1:5967683 4.78E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57069 PF00847 AP2 1.80E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01111 K09286 - csv:101214481 205.297