Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01129 ATGGAGATGTCATTGCTGAAACAACTTGGGAGCCACATCTCTTCATTTTTTGATTTGTTATCCAGGAACAACATAAACTCAGAACCTATTCTGAGGCATTACCAAGAAGCTGAACAGTTAATGAAGCAGTTGAACCCAGTTATAAAAACACTTGTTGATCTTGAAATACAGTTTGATGAGGAAGTTCATAAGCAATTTGAAGAACTAATTCATTTTGCGGATGAATTGATCGAGCATTACGAAAAGTGGCGGCCATTTTCAAGCAAAGTATTCTTTGTTCTGCAAAGTGAAGACCTGATATCAAAGATCAAAAAACATGTCCTGGTTATTATCCAACTTCTGCAGACTTCGAACGAACAATTTAATGCGGCATTGGCGTTAAGTGAGCAATGGTTTGAAGACATTGCGTGCAAGAAATCTGAACGAATGTTAACTATCATCAACGATGCTCTTAGATATCAAGTAGAGGGCAGTCGGCCCAGTTCAGGCATGTTGGTGAAAATGGCAGAGGGCCTGAACTTATGGACAAACCAGGAGATTCTGATTGAGGCAGTAGCACTGCAGAAGTTGAAGGAGAATGCTGAACAAGCTGAGCAGAACGACGAAGCTGAGCATATTGATCAAATTATTTGTCTTCTGATGTCCATGCATGAGCTGCTAATTGCAATTAAGAAGTCTCAAATTTGTAGTCCTGTCGAAATACCTGCCGACTTGTTCTGTCCCATCTCTCTGGAACTAATGACTGATCCAGTGATTGTGACATCTGGACAAACGTATGAACGGAGTTCTATCAAGAACTGGATCGACCGCGGCCTCGATGTTTGTCCAAAGACAAGACAGAAATTGGTCAACACTAATTTGTGTCCTAATATTATCGTCAAGGCACTTATCACAAACTGGTGTGAAATAAACAATGTGAAGCTACCTGATTCCACTTGTCCAGTGAGCTTAAACCAGACATTGGTTGAAATCGGTGAGCGTAAACCTGATAAGAAGTTAAAGTCATCCAATGAAATCAGGGAGGAAGCTTCTCCTTTTTATGCCAGTCCTGCAGCCGAAGGTTCTCTGGTGTCCAACTCTAGTAATGACCTGGATATGGAAGACCGACAAGGAGCTGACTCGAGTAGAAATGATTTTTCCTTTATGGAGGAAGAACGAATTCAAAATATCAGCAGAGCTGCAACTGACCCGAGTGAAATTTCTAATCCTAACTTTTCTCCCACAACATCAGACGATGCTGATGAAGCTTTTCTGGTCTCAACTACTTTGAGTAAGTATGAAGGCAATGAGTTTGAGAAGGTTAAACCAGAGTCGCCACTTAGATTGATGGATGGACCATATCGAGACCAAACTCCGAGCAGGTCGTTGGTGAATTTTGTCCCTCGAATAGTTCCTTCATCTGGGACTGGAACCAGCAATGACCTTTACGGGATTGAATCCCAAATTAAGAATCTAGTTCAGGACTTGAGGAGCACTTCATATGATACTTTACGAAAGGCTACGGAGCAATTACGGCTGCTTGCAAAGGTCGACACGGAAAATCGGATTCTGATTGCAACTTGCGGAGCCATCGGCCTTTTAGTCAATCTGCTCCACTTTCCTGATGCTAAGATCCAGGAATATTCAGTCACTGCCCTTCTTAACCTATCGATCAACGATAATAACAAAAGTATCATTACTGAGGCTAATGCCATTGAACCACTGATTCATGTGCTCGAAACTGGCAGCTCAGAGGCAAAAGAGAACACGGCTGCTACCCTTTCTAGTATTTCAGTGATAGGAGATAATAAGATCAGGATTGGAAGTTCCGGTGCAATAGGACCATTGATTGAATTGTTGGAGAATGGCAGTCCAAGGGGAAAGAAAGATGCGGCCACAGCCCTGTATAATTTGTCGTTATCAAGAGAAAACAAGGCCAAGATCATTAAAGCCGGAGGTGTGAAACATCTGGTGGACTTGATGGACCCGGCATATGGTATCGTGGACAAGGCCGTTTCAGTGTTGGCAAATTTGGCGACAATTGATGATGGTAAGAAGGAGATTGGTCAACACCCAAGTGGCATTCCTGCATTGGTCGAGGTAGTGGAGCTGGGTTCTGCTCGAGGAAAAGAAAGTGCAGCCGCGGCCCTTTGGCTTCTTTGCTCTGCTAGTAATAAATTTTGTTGGAAGGTGATACACGAAGGAGCAGTTCCTCCGTTGGTGGTGCTGTCACAATCCGGCACCCCGAGGGCCAGAGACAAGGCGCAGTCGCTTCTGAATCGTCTCATAACTCTGCGACATGGCAAAGCTGGAAGAGTCTGA 2301 43.63 MEMSLLKQLGSHISSFFDLLSRNNINSEPILRHYQEAEQLMKQLNPVIKTLVDLEIQFDEEVHKQFEELIHFADELIEHYEKWRPFSSKVFFVLQSEDLISKIKKHVLVIIQLLQTSNEQFNAALALSEQWFEDIACKKSERMLTIINDALRYQVEGSRPSSGMLVKMAEGLNLWTNQEILIEAVALQKLKENAEQAEQNDEAEHIDQIICLLMSMHELLIAIKKSQICSPVEIPADLFCPISLELMTDPVIVTSGQTYERSSIKNWIDRGLDVCPKTRQKLVNTNLCPNIIVKALITNWCEINNVKLPDSTCPVSLNQTLVEIGERKPDKKLKSSNEIREEASPFYASPAAEGSLVSNSSNDLDMEDRQGADSSRNDFSFMEEERIQNISRAATDPSEISNPNFSPTTSDDADEAFLVSTTLSKYEGNEFEKVKPESPLRLMDGPYRDQTPSRSLVNFVPRIVPSSGTGTSNDLYGIESQIKNLVQDLRSTSYDTLRKATEQLRLLAKVDTENRILIATCGAIGLLVNLLHFPDAKIQEYSVTALLNLSINDNNKSIITEANAIEPLIHVLETGSSEAKENTAATLSSISVIGDNKIRIGSSGAIGPLIELLENGSPRGKKDAATALYNLSLSRENKAKIIKAGGVKHLVDLMDPAYGIVDKAVSVLANLATIDDGKKEIGQHPSGIPALVEVVELGSARGKESAAAALWLLCSASNKFCWKVIHEGAVPPLVVLSQSGTPRARDKAQSLLNRLITLRHGKAGRV 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 14907575 14914673 + Bma017521.1 Bma03g01129 79802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01129 766 SMART Ubox_2 237 300 IPR003613 GO:0004842|GO:0016567
Bma03g01129 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 645 681 IPR000225 GO:0005515
Bma03g01129 766 CDD RING-Ubox_PUB 240 280 IPR045210 -
Bma03g01129 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 604 646 IPR000225 GO:0005515
Bma03g01129 766 PANTHER U BOX DOMAIN-CONTAINING 12 757 - -
Bma03g01129 766 SMART arm_5 634 673 IPR000225 GO:0005515
Bma03g01129 766 SMART arm_5 593 633 IPR000225 GO:0005515
Bma03g01129 766 SMART arm_5 674 715 IPR000225 GO:0005515
Bma03g01129 766 SMART arm_5 552 592 IPR000225 GO:0005515
Bma03g01129 766 SMART arm_5 511 551 IPR000225 GO:0005515
Bma03g01129 766 Pfam Armadillo/beta-catenin-like repeat 635 672 IPR000225 GO:0005515
Bma03g01129 766 Pfam Armadillo/beta-catenin-like repeat 511 550 IPR000225 GO:0005515
Bma03g01129 766 Pfam Armadillo/beta-catenin-like repeat 552 591 IPR000225 GO:0005515
Bma03g01129 766 Pfam Armadillo/beta-catenin-like repeat 595 632 IPR000225 GO:0005515
Bma03g01129 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 233 308 IPR013083 -
Bma03g01129 766 SUPERFAMILY ARM repeat 482 756 IPR016024 -
Bma03g01129 766 MobiDBLite consensus disorder prediction 328 379 - -
Bma03g01129 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 522 564 IPR000225 GO:0005515
Bma03g01129 766 Pfam U-box domain 234 304 IPR003613 GO:0004842|GO:0016567
Bma03g01129 766 ProSiteProfiles U-box domain profile. 233 307 IPR003613 GO:0004842|GO:0016567
Bma03g01129 766 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 757 - -
Bma03g01129 766 Gene3D - 474 762 IPR011989 -
Bma03g01129 766 SUPERFAMILY RING/U-box 231 310 - -
Bma03g01129 766 Coils Coil 177 207 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01129 Bma09g00003 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01129 Bma-Chr3:14907575 Bma09g00003 Bma-Chr9:236508 0 dispersed
Bma14g00922 Bma-Chr14:10426965 Bma03g01129 Bma-Chr3:14907575 1.26E-09 dispersed
Bma03g01129 Bma-Chr3:14907575 Bma11g00122 Bma-Chr11:1154400 3.98E-06 transposed
Bma03g01129 Bma-Chr3:14907575 Bma07g00027 Bma-Chr7:1236167 2.04E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01129 - - tcc:18611233 742.651