Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01138 ATGGAGCAAATACTGGTCCACTGCGCCAACGCTATTGAAAGCAACGACGGCACTCTCGCCCAGCAAATCCTTTGGGTCCTAAACAACATTGCCCCACCCGACGGCGACTCAAATCAGCGCCTCACCTACGGCTTCCTCCGAGCTCTCATTGTGCGCGCAGCCAAAAGTGGACGCTGTAAAATGCTCGCAGCTATGGTGAGCGCTCGCAACAATTTGTCTATCGACACCCATAAATTCTCTGTCATTGAGCTTGCCAGCTTCGTGGACTTAACACCCTGGTATAGATTCGGCTTCACTGCAGCCAATGCAGCGACTCTAGACGCTGTTGAGGGGTTCTCTATCATCCACATCGTGCATTTAAGCTCCGCACATTGCATGCAAATTCCGACGCTAATCGATGCTGTTGCTAGTCGTTACGAGATTCCACCATTGATAAAGCTCACGGTTGTTGCAGATGCCACAGGAGATATGCCACCTCTACTTGACCTTTCTTTCGACGAATTGGGTTCGAAGCTAGTGAATTTTGCAAGGTACAGAAACGTAGTGATGGAATTTAGAGTAGTGAATTCAAGTTATACCGATGGATTTGCCAACCTAATCGAACAACTTCGATTGCAATATTTAGTTTACTCAGAAAGTAGAGAGGCGTTAATTATAAACTGCCACATGATTCTTCATCATATTCCAGAAGAAACCATTTCTTCGAAACAAAACACAAACCTACTTTCTTTTGAATCTTCTTCCTCGCTTCGGACAATGTTTTTGAAAGCACTTCGAAGCTTAGAGCCCACAATTGTGTTCTTAATCGATGAAGATGCAGATTTAACGTCAAATAACTTAGTTTGCAGATTAAGAGCAGCCTTCAACTACTTCTGGATTCATTATGATACAGTAGACACTTTTCTTCCAAGAGGAATCAATCAAAGGCAGTGGTACGTGTTAGAGTATGACTATTTGTAA 960 43.96 MEQILVHCANAIESNDGTLAQQILWVLNNIAPPDGDSNQRLTYGFLRALIVRAAKSGRCKMLAAMVSARNNLSIDTHKFSVIELASFVDLTPWYRFGFTAANAATLDAVEGFSIIHIVHLSSAHCMQIPTLIDAVASRYEIPPLIKLTVVADATGDMPPLLDLSFDELGSKLVNFARYRNVVMEFRVVNSSYTDGFANLIEQLRLQYLVYSESREALIINCHMILHHIPEETISSKQNTNLLSFESSSSLRTMFLKALRSLEPTIVFLIDEDADLTSNNLVCRLRAAFNYFWIHYDTVDTFLPRGINQRQWYVLEYDYL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15148342 15149301 - Bma017532.1 Bma03g01138 79811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01138 319 ProSiteProfiles GRAS family profile. 1 319 IPR005202 -
Bma03g01138 319 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 312 IPR005202 -
Bma03g01138 319 Pfam GRAS domain family 2 311 IPR005202 -
Bma03g01138 319 PANTHER SCARECROW-LIKE PROTEIN 32 1 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01138 Bma-Chr3:15148342 Bma05g00091 Bma-Chr5:2970523 0 dispersed
Bma03g01138 Bma-Chr3:15148342 Bma02g01308 Bma-Chr2:55213484 5.78E-28 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57071 PF03514 GRAS 9.30E-59 CL0063 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01138 - - tcc:18611261 491.115