Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01153 ATGCTGATGTTTCAGCCTTCGAAGAGAGATGGGGTTGTTGGGTTTGACGGTGGCGGAGCTGGGCATGTTCTAGATCTGGACACGGCCGTAAAAGACGGAGTATTGGGCGGCATTGACGGTGGCGTTGTTGGAACAGGAGTTGGGGAGAAATTGGATCTGAAGAAGATGATCGAAGATCTAAACTTGTCTGAGGTGCCGTCGGTGTTCATCTGCCCCATTTCTCTCGAACCAATGCAGGACCCAGTGACCCTTTGCACCGGCCAAACGTACGAGAGGTCCAATATTCTCAAATGGTTCAATCTGGGGCACTACACCTGCCCCACGACAATGCAGGAGCTTTGGGACGATTCCATTACACCCAACACCACACTTTACCATCTAATCTACTCTTGGTTTACCCAGAAGTATTTTCTCATGAAGAAGAGGTCAGAAGATGTTCAAGGAAGAACGTCAGAACTTCTCAAAACTCTCAAAAAAGTAAAGGGTCAGGCCAGAGTTCAAGCCCTCAAGGAGGTTCGACAAATCGTGGCCGTTCATGCCACGGTCAGGAAAACAGTGATCGAGGAAGGAGGGGTTTCGATAATTACATCCCTATTAGGTCCCTTTACGTCTCACGCTGTCGGCTCCGAAGCCATTGGGATTCTTGTGAATTTGGCACTCGATTCGGACTCAAAAGTAAATTTGATGCAGCCAGCAAAATTTTCACTGATGGTGGATATTCTAAACGAAGGATCTATTGGAACTAAGACCAATTGTACGATGTTGATCGAGATGCTGATGGAAGAGAAAGATTTCCAGTCGGAAATCGTTTCGAGCCACAGCCTTTTGGTCGGACTAATGAGACTGATAAAAGATAAGAGGCATCCTAACGGTGTCTTTTCAGGCCTCCGGCTCCTAAAAACAATATGCTTTCATGCAGAAGTCAGAAATTTGGTAGTAAGCATTGGGGTGGTTCGACAATTGGTTGAGATGTTACCTTCTCTGGGTCCCGATAGCTTAGAGCTCGTACTCATCATATTGGAAACTTTGTCATCTCTACCAGAAGGAGGATTAGCTTTGAAAGAGTGCTTGTATACGATACCGTATATGGTGAAGCTGATTATGAGAGTTTCGGAGAGCTGTACAAAATATGCGCTGTCAATCATATCGGCTGTGTGTAAACTTGCCCCTGATGAATGCTCTTCGGTCGCTGTTGATGAGGGGCTTGCTGCGAAGCTCCTCCTAGTTATTCAAAGTGGGTGCGGACCAGCTCTGAAGCAGCAATCTGCAGAGCTGTTGAAGTTGTGTAGTCTGAATTACACAGATACGACGTTTATTTCCAAGTGCAAGCTTTCAAGAACTATACAATGA 1350 46.15 MLMFQPSKRDGVVGFDGGGAGHVLDLDTAVKDGVLGGIDGGVVGTGVGEKLDLKKMIEDLNLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHYTCPTTMQELWDDSITPNTTLYHLIYSWFTQKYFLMKKRSEDVQGRTSELLKTLKKVKGQARVQALKEVRQIVAVHATVRKTVIEEGGVSIITSLLGPFTSHAVGSEAIGILVNLALDSDSKVNLMQPAKFSLMVDILNEGSIGTKTNCTMLIEMLMEEKDFQSEIVSSHSLLVGLMRLIKDKRHPNGVFSGLRLLKTICFHAEVRNLVVSIGVVRQLVEMLPSLGPDSLELVLIILETLSSLPEGGLALKECLYTIPYMVKLIMRVSESCTKYALSIISAVCKLAPDECSSVAVDEGLAAKLLLVIQSGCGPALKQQSAELLKLCSLNYTDTTFISKCKLSRTIQ 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 15777958 15779307 + Bma017558.1 Bma03g01153 79826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01153 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Bma03g01153 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Bma03g01153 449 SUPERFAMILY RING/U-box 60 135 - -
Bma03g01153 449 SUPERFAMILY ARM repeat 147 348 IPR016024 -
Bma03g01153 449 CDD RING-Ubox_PUB 69 111 IPR045210 -
Bma03g01153 449 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 30 38 448 - -
Bma03g01153 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 138 IPR013083 -
Bma03g01153 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Bma03g01153 449 Gene3D - 139 441 IPR011989 -
Bma03g01153 449 PANTHER WDSAM1 PROTEIN 38 448 IPR045185 GO:0061630
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01153 Bma-Chr3:15777958 Bma05g00512 Bma-Chr5:24684940 3.76E-42 dispersed
Bma03g01153 Bma-Chr3:15777958 Bma03g01155 Bma-Chr3:15818390 5.63E-35 proximal
Bma05g00028 Bma-Chr5:1918102 Bma03g01153 Bma-Chr3:15777958 0 transposed
Bma03g01153 Bma-Chr3:15777958 Bma06g00334 Bma-Chr6:7154614 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01153 - - zju:107424993 702.975