Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g01175 | ATGGGTTTTGATAACCATCTTGGCGACATGGGTCTTCTTCTAGGTTTAGGATTCACTTCTACCCAGGATTCTGAATCAAACACTGTCAATCCGTTTTTGAAGAAACCTACCTTCGATCACGTCGGAGGAGGTCTCGAGCCGTCTTTAACTTTGGGTCTTTCCGGCGAGACTCATCGAATCGCAAGCCAAAAGATTGATATGAACAAAGGTTGTGAGGAGGGAGATAATCTGATTCGGCAAGCTTCGTCGCAAAGTGCTGTTTCTTCTTTCTCCAGTGGTAGGGTAAAGAGGGAGAGAGAGCATAGCAGTGAGGAGGTGGAGGTGGAGAAAGTCTCGTCAAGAGTAAGCGATGAAGATGAAGATGGCTCTAATGTCAGAAAGAAACTTAGGCTAACGAAAGATCAGTCGGCCCTCCTGGAAGAAAGCTTCAAACTCAACAGCACTCTCAACCCTAAGCAAAAGCAAGCTTTAGCTAGGCAGCTAAATCTCCGACCCAGACAAGTTGAAGTGTGGTTTCAGAACAGACGAGCGAGAACAAAGCTCAAGCAAACAGAAGTAGACTACGAGTTTCTGAAGAAATGCTGCGAAACCCTGACAGATGAAAACAGAAGGCTACAGAAAGAGCTTCAGGAGCTGAAGGCAGTAAAAATGGCTCAACCCCTTTACATGCACATGCCGGCAGCAACCCTCGCGATCTGTCCTTCTTGTGAGAGGCTCAACGGTGGAGTTTCCAAGGCTCCATTTTCCATGGCTTCGAAGCCTGCCTTCTACAATCTCTTCACTAATCCTTCTGCCGCCTGTTAG | 804 | 47.14 | MGFDNHLGDMGLLLGLGFTSTQDSESNTVNPFLKKPTFDHVGGGLEPSLTLGLSGETHRIASQKIDMNKGCEEGDNLIRQASSQSAVSSFSSGRVKREREHSSEEVEVEKVSSRVSDEDEDGSNVRKKLRLTKDQSALLEESFKLNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLTDENRRLQKELQELKAVKMAQPLYMHMPAATLAICPSCERLNGGVSKAPFSMASKPAFYNLFTNPSAAC | 267 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 17104644 | 17105681 | + | Bma017594.1 | Bma03g01175 | 79848 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g01175 | 267 | ProSitePatterns | 'Homeobox' domain signature. | 157 | 180 | IPR017970 | GO:0000981|GO:0006355 | |
Bma03g01175 | 267 | CDD | homeodomain | 126 | 183 | IPR001356 | GO:0003677 | |
Bma03g01175 | 267 | Gene3D | - | 119 | 187 | - | - | |
Bma03g01175 | 267 | MobiDBLite | consensus disorder prediction | 93 | 125 | - | - | |
Bma03g01175 | 267 | Pfam | Homeodomain | 126 | 180 | IPR001356 | GO:0003677 | |
Bma03g01175 | 267 | SMART | halz | 182 | 225 | IPR003106 | GO:0006355|GO:0043565 | |
Bma03g01175 | 267 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE | 7 | 267 | - | - | |
Bma03g01175 | 267 | Coils | Coil | 188 | 218 | - | - | |
Bma03g01175 | 267 | MobiDBLite | consensus disorder prediction | 82 | 125 | - | - | |
Bma03g01175 | 267 | PANTHER | - | 7 | 267 | - | - | |
Bma03g01175 | 267 | SUPERFAMILY | Homeodomain-like | 115 | 183 | IPR009057 | - | |
Bma03g01175 | 267 | ProSiteProfiles | 'Homeobox' domain profile. | 122 | 182 | IPR001356 | GO:0003677 | |
Bma03g01175 | 267 | SMART | HOX_1 | 124 | 186 | IPR001356 | GO:0003677 | |
Bma03g01175 | 267 | Pfam | Homeobox associated leucine zipper | 182 | 215 | IPR003106 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g01175 | Bma-Chr3:17104644 | Bma10g00168 | Bma-Chr10:1446294 | 5.85E-68 | dispersed | |
Bma15g01097 | Bma-Chr15:43737466 | Bma03g01175 | Bma-Chr3:17104644 | 1.44E-83 | wgd | |
Bma03g01175 | Bma-Chr3:17104644 | Bma06g00325 | Bma-Chr6:6236831 | 1.25E-153 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57079 | PF00046 | Homeodomain | 2.20E-16 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g01175 | K09338 | - | pop:7497727 | 327.02 |