Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01175 ATGGGTTTTGATAACCATCTTGGCGACATGGGTCTTCTTCTAGGTTTAGGATTCACTTCTACCCAGGATTCTGAATCAAACACTGTCAATCCGTTTTTGAAGAAACCTACCTTCGATCACGTCGGAGGAGGTCTCGAGCCGTCTTTAACTTTGGGTCTTTCCGGCGAGACTCATCGAATCGCAAGCCAAAAGATTGATATGAACAAAGGTTGTGAGGAGGGAGATAATCTGATTCGGCAAGCTTCGTCGCAAAGTGCTGTTTCTTCTTTCTCCAGTGGTAGGGTAAAGAGGGAGAGAGAGCATAGCAGTGAGGAGGTGGAGGTGGAGAAAGTCTCGTCAAGAGTAAGCGATGAAGATGAAGATGGCTCTAATGTCAGAAAGAAACTTAGGCTAACGAAAGATCAGTCGGCCCTCCTGGAAGAAAGCTTCAAACTCAACAGCACTCTCAACCCTAAGCAAAAGCAAGCTTTAGCTAGGCAGCTAAATCTCCGACCCAGACAAGTTGAAGTGTGGTTTCAGAACAGACGAGCGAGAACAAAGCTCAAGCAAACAGAAGTAGACTACGAGTTTCTGAAGAAATGCTGCGAAACCCTGACAGATGAAAACAGAAGGCTACAGAAAGAGCTTCAGGAGCTGAAGGCAGTAAAAATGGCTCAACCCCTTTACATGCACATGCCGGCAGCAACCCTCGCGATCTGTCCTTCTTGTGAGAGGCTCAACGGTGGAGTTTCCAAGGCTCCATTTTCCATGGCTTCGAAGCCTGCCTTCTACAATCTCTTCACTAATCCTTCTGCCGCCTGTTAG 804 47.14 MGFDNHLGDMGLLLGLGFTSTQDSESNTVNPFLKKPTFDHVGGGLEPSLTLGLSGETHRIASQKIDMNKGCEEGDNLIRQASSQSAVSSFSSGRVKREREHSSEEVEVEKVSSRVSDEDEDGSNVRKKLRLTKDQSALLEESFKLNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCETLTDENRRLQKELQELKAVKMAQPLYMHMPAATLAICPSCERLNGGVSKAPFSMASKPAFYNLFTNPSAAC 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17104644 17105681 + Bma017594.1 Bma03g01175 79848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01175 267 ProSitePatterns 'Homeobox' domain signature. 157 180 IPR017970 GO:0000981|GO:0006355
Bma03g01175 267 CDD homeodomain 126 183 IPR001356 GO:0003677
Bma03g01175 267 Gene3D - 119 187 - -
Bma03g01175 267 MobiDBLite consensus disorder prediction 93 125 - -
Bma03g01175 267 Pfam Homeodomain 126 180 IPR001356 GO:0003677
Bma03g01175 267 SMART halz 182 225 IPR003106 GO:0006355|GO:0043565
Bma03g01175 267 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 7 267 - -
Bma03g01175 267 Coils Coil 188 218 - -
Bma03g01175 267 MobiDBLite consensus disorder prediction 82 125 - -
Bma03g01175 267 PANTHER - 7 267 - -
Bma03g01175 267 SUPERFAMILY Homeodomain-like 115 183 IPR009057 -
Bma03g01175 267 ProSiteProfiles 'Homeobox' domain profile. 122 182 IPR001356 GO:0003677
Bma03g01175 267 SMART HOX_1 124 186 IPR001356 GO:0003677
Bma03g01175 267 Pfam Homeobox associated leucine zipper 182 215 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01175 Bma-Chr3:17104644 Bma10g00168 Bma-Chr10:1446294 5.85E-68 dispersed
Bma15g01097 Bma-Chr15:43737466 Bma03g01175 Bma-Chr3:17104644 1.44E-83 wgd
Bma03g01175 Bma-Chr3:17104644 Bma06g00325 Bma-Chr6:6236831 1.25E-153 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57079 PF00046 Homeodomain 2.20E-16 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01175 K09338 - pop:7497727 327.02