Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01194 ATGGCAAAGTCACCGGAGACAGAGCACCCAAACAAGGCCTGTGGATGGGCTGCCAGAGACACCTCTGGCGTTCTTTCCCCTTTCCATTTCTCTCGAAGGAAGGCGGGTGAGAAAGATGTGGCGTTCAAAGTGCTTTATTGTGGAATTTGTCACAGCGACCTTCACATGCTGAAAAACGAATGGGGCAGTTCCGTCTATCCTCTCGTTCCTGGGCATGAAATAGTGGGAGTAGTGACAGAGGTTGGGAAGAAAGTAGAAAAATTCAAAGTTGGAGATAGAGTCGGCGTGGGTTGTATGGTAGGATCGTGCCGATCTTGTGGCAGCTGTGCGCAAGACCTCGAAAACTACTGCTCCAAAATGATTCTCACCTATGCAGCAAAAGACACCGATGGAACGATCACGTACGGAGGCTACTCCGACCACATGGTGGCCGATGAACACTTCATTGTCCGCATCCCAGACGGCCTCCCTCTCGACGCATCTGCACCGCTCCTCTGTGCTGGCATAACCGTTTATAGCCCGTTGAGATATTACGGCCTCGACAAGCCCGGCATGCATATCGGTATAGTTGGCCTGGGCGGGCTCGGCCATGTGGGCGTCAAGTTTGCCAAGGCTTTTGGTGCGAAGGTCACTGTGATTAGTACTTCCCCTGCTAAGAAAGAGGAGGCTATTCAACGTCTCGGCGCTGACTCCTTTTTGGTTAGCAGGGACCAGACCCAATTGCAGGCTGAAATGGGCACGTTTGATGGTATCATTGATACTGTGTCGGCTGCCCACCCTCTTGTGCCGCTGCTTGGCTTGCTGAAACCACATGGGAAGCTTGTCATGGTCGGTGCTCCGGAGAAGCCATTGGAGCTTCCGGCCTTCGCCTTGCTCATGGGTATGAAATTAGTGGGGGGTAGCTGCATTGGAGGAATGAAGGAGACACAGGAGATGATCGATTTTGCAGCGAAGCATGGGATCGCGGCGGATGTGGAGGTGATTAAGATGGACTACGTGAATGAAGCCATGGCTCGGATGCTGAAAGCAGACGTGAAATATCGGTTCGTCCTCGACGTCGGCAACACCTTGAAGCCTAGCACTTAA 1086 52.67 MAKSPETEHPNKACGWAARDTSGVLSPFHFSRRKAGEKDVAFKVLYCGICHSDLHMLKNEWGSSVYPLVPGHEIVGVVTEVGKKVEKFKVGDRVGVGCMVGSCRSCGSCAQDLENYCSKMILTYAAKDTDGTITYGGYSDHMVADEHFIVRIPDGLPLDASAPLLCAGITVYSPLRYYGLDKPGMHIGIVGLGGLGHVGVKFAKAFGAKVTVISTSPAKKEEAIQRLGADSFLVSRDQTQLQAEMGTFDGIIDTVSAAHPLVPLLGLLKPHGKLVMVGAPEKPLELPAFALLMGMKLVGGSCIGGMKETQEMIDFAAKHGIAADVEVIKMDYVNEAMARMLKADVKYRFVLDVGNTLKPST 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 17950504 17952292 + Bma017620.1 Bma03g01194 79867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01194 361 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Bma03g01194 361 Gene3D - 167 323 - -
Bma03g01194 361 Gene3D - 16 353 - -
Bma03g01194 361 PANTHER ALDEHYDE REDUCTASE 2 359 - -
Bma03g01194 361 Pfam Alcohol dehydrogenase GroES-like domain 38 151 IPR013154 -
Bma03g01194 361 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Bma03g01194 361 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Bma03g01194 361 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Bma03g01194 361 CDD CAD1 15 352 - -
Bma03g01194 361 SUPERFAMILY GroES-like 20 184 IPR011032 -
Bma03g01194 361 PANTHER LOW QUALITY PROTEIN: 8-HYDROXYGERANIOL DEHYDROGENASE-LIKE 2 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01039 Bma-Chr3:12141113 Bma03g01194 Bma-Chr3:17950504 1.39E-170 dispersed
Bma03g01194 Bma-Chr3:17950504 Bma06g00655 Bma-Chr6:35204886 0 dispersed
Bma15g00757 Bma-Chr15:15622763 Bma03g01194 Bma-Chr3:17950504 1.09E-19 dispersed
Bma15g00759 Bma-Chr15:15661955 Bma03g01194 Bma-Chr3:17950504 5.75E-20 dispersed
Bma04g00805 Bma-Chr4:9499246 Bma03g01194 Bma-Chr3:17950504 1.20E-15 transposed
Bma05g00197 Bma-Chr5:5452839 Bma03g01194 Bma-Chr3:17950504 4.50E-12 transposed
Bma15g01079 Bma-Chr15:43134402 Bma03g01194 Bma-Chr3:17950504 2.81E-77 wgd
Bma03g01194 Bma-Chr3:17950504 Bma06g00315 Bma-Chr6:5280906 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01194 - K23232 mcha:111005856 578.941