Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01197 ATGGCTCCGGCGACTAACTGGCTCTCGTTCTCTCTATCTCCGGTTGAAATGCTGAGGTCTTCTGCTGAATCTCAGTTTATGCCTTACGACACCTCGTCCACTGCTTCTCATCACTACTTGATCGATAATATCTACTCAAATGGTACTGCATCTGGTTCTTTTTTTCGAAAAAAGGTTCAAAGTTTGATTGTTCTTTCAGGTTGGGAAAACCCCAAACAAGTTCAAGCTTCAAGTAGTATCGCCGATTCACATATTCTGACTAGCTTCATCGACCACAATTGCCAAAACCAAGGAGCACCGAAACTGGAAGACTTTCTCGGTGAGTCGTCGCTAATGGTTCGATATTCCGATAGCCAAACGGAAACTCAAGACTCGTCTTTAACCCAAATCTATGACCATGGTTCAACCTACTTCAACGACCAGCAATATCTCAAAGCTATTACCGGGTTTCAAGCTTTCTCAGCCAACTCTGGTTCGGAAGTGGATGACTCGGCATCTATCGCTCGGAACCAGCTCGCTTGCGGCGAGTTCGCCGGCCATTCTATTGAGTCGTCCGGCACCGGATTAGCCTATAATAATTGTTCTACCGGTGCACTGTCACTCGGGGTTGCTAAGAGATCGGAAAAAGCGGTTGTTCCGATAGAATCCGATAGCTCGAAGAAGATCGTTGATACTTTTGGCCAGCGAACTTCGATTTACAGAGGCGTTACTCGACACAGATGGACTGGTGGATATGACAAAGAAGATAAGGCAGCGAGGGCTTATGATCTGGCAGCTTTGAAATACTGGGGTCCCACTGCCACTACCAACTTTCCTGTTTCTTCTAATTACACCAAAGAACTGGAGGAGATGAAACATGTGACTAAGCAAGAATTCATCGCTTCTCTTCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCGATTTATCGAGGCGTGACAAGGCATCATCAACAGGGAAGGTGGCAAGCGAGGATAGGCCGAGTTGCCGGGAATAAGGATCTGTACCTCGGGACATTTGCGACCGAAGAGGAAGCGGCTGAAGCTTACGATATCGCAGCTATAAAGTTCAGAGGCTTAAATGCAGTCACAAACTTCGAGATGGGACGATACGATGTGGAAGCAATTTCAAAGAGCAATCTCCCCATAGGAGGAGCTTCAAAAAGGTTAAAGCTCTCACTCGAATCCGAGCAGAAGCCATCCATTATGCACCATAATTTACAGCAATCGAGCATTAGTGGCGGAAACAACATAAGTTTTGGTGCAATTCAACCTGTTCCGGCTATTGCATGTGGACTGCCGTTCGAAGCTTCTACTTCTCCAATGCTTTATCATCATAATCTCTTCCACCACCTCCAACCCAACAGCACTAGCACGCCTGGTTCGACGCCGACGAATGTGATGCCACGGCCGCCAGAATTTTATGTGTGGCCTCACCAGTCCTATTGA 1449 46.93 MAPATNWLSFSLSPVEMLRSSAESQFMPYDTSSTASHHYLIDNIYSNGTASGSFFRKKVQSLIVLSGWENPKQVQASSSIADSHILTSFIDHNCQNQGAPKLEDFLGESSLMVRYSDSQTETQDSSLTQIYDHGSTYFNDQQYLKAITGFQAFSANSGSEVDDSASIARNQLACGEFAGHSIESSGTGLAYNNCSTGALSLGVAKRSEKAVVPIESDSSKKIVDTFGQRTSIYRGVTRHRWTGGYDKEDKAARAYDLAALKYWGPTATTNFPVSSNYTKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMGRYDVEAISKSNLPIGGASKRLKLSLESEQKPSIMHHNLQQSSISGGNNISFGAIQPVPAIACGLPFEASTSPMLYHHNLFHHLQPNSTSTPGSTPTNVMPRPPEFYVWPHQSY 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18063167 18066589 - Bma017623.1 Bma03g01197 79870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01197 482 ProSiteProfiles AP2/ERF domain profile. 199 272 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 SUPERFAMILY DNA-binding domain 308 368 IPR016177 GO:0003677
Bma03g01197 482 PRINTS Ethylene responsive element binding protein signature 233 244 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 PRINTS Ethylene responsive element binding protein signature 349 369 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 CDD AP2 231 274 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 ProSiteProfiles AP2/ERF domain profile. 309 367 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 Gene3D AP2/ERF domain 309 368 IPR036955 GO:0003700|GO:0006355
Bma03g01197 482 Gene3D AP2/ERF domain 229 274 IPR036955 GO:0003700|GO:0006355
Bma03g01197 482 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 243 - -
Bma03g01197 482 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 243 460 - -
Bma03g01197 482 SMART rav1_2 232 278 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 SMART rav1_2 309 373 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 CDD AP2 308 367 IPR001471 GO:0003700|GO:0006355
Bma03g01197 482 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 243 - -
Bma03g01197 482 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 243 460 - -
Bma03g01197 482 SUPERFAMILY DNA-binding domain 232 274 IPR016177 GO:0003677
Bma03g01197 482 Pfam AP2 domain 309 359 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01197 Bma-Chr3:18063167 Bma06g00647 Bma-Chr6:34511454 0 dispersed
Bma03g01197 Bma-Chr3:18063167 Bma07g01409 Bma-Chr7:49858960 4.35E-90 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57083 PF00847 AP2 1.80E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01197 K09285 - qsu:112018242 634.024