Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01203 ATGGCAAGAGAAAAGATTCAGATCAAGAAGATCGACAACCTGACGGCCCGACAGGTGACCTTCTCTAAGAGAAGAAGAGGTCTTTTTAAGAAAGCTGAGGAGCTTGCAGTTCTCTGCGATGCCGATGTTGGCCTTATTATCTTCTCCTCTACTGGAAAACTCTTCGAATACGCCAGCTCAAGTATGAAGGAAATTCTGGAGAGGCAAAATCTGCATTCTAAGAATCTGCAGAAGCTGGAGCAGCCATCGCTAGAGTTGCAGCTAGTGGAGAACAGCAACTACACGATGCTGAACAAGGAAATAGCAGATAGAAGCCATCAATTAAGGCAGATGAGAGGAGAGGAGCTCCAAGGGCTGAACATAGAAGAACTGCTGCAACTCGAGAAATCGTTGGAATCTGGATTAAACAGCGTGATTGAGAAGAAGGGTGAAAAGATAATGCAGGAGATTTCTGATCTTCAAAAAAAGGAGAAGGTACTGATGCAGGAGAATCAGAGATTGAGACAGCTGGTGCAGATGGATAATGGAAGAAAGGAGGTGAGAGAGGAGTCAGACAACGCGGTTGCCAGAAGAGGGGCAGTCATCGGAATCAGTGACGAACGTCTGCAACTCCGGTGGGCCTCCCGTTGA 630 46.83 MAREKIQIKKIDNLTARQVTFSKRRRGLFKKAEELAVLCDADVGLIIFSSTGKLFEYASSSMKEILERQNLHSKNLQKLEQPSLELQLVENSNYTMLNKEIADRSHQLRQMRGEELQGLNIEELLQLEKSLESGLNSVIEKKGEKIMQEISDLQKKEKVLMQENQRLRQLVQMDNGRKEVREESDNAVARRGAVIGISDERLQLRWASR 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 18498384 18500494 - Bma017631.1 Bma03g01203 79876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01203 209 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Bma03g01203 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 SUPERFAMILY SRF-like 3 84 IPR036879 GO:0003677|GO:0046983
Bma03g01203 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 ProSiteProfiles K-box domain profile. 87 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g01203 209 PANTHER MADS-BOX PROTEIN SVP ISOFORM X1 1 193 - -
Bma03g01203 209 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Bma03g01203 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 - -
Bma03g01203 209 Pfam K-box region 92 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma03g01203 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma03g01203 209 Coils Coil 150 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00112 Bma-Chr2:1031212 Bma03g01203 Bma-Chr3:18498384 2.05E-23 dispersed
Bma03g01203 Bma-Chr3:18498384 Bma08g00038 Bma-Chr8:560062 9.22E-54 dispersed
Bma03g01203 Bma-Chr3:18498384 Bma01g01374 Bma-Chr1:21298583 4.21E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57084 PF01486 K-box 2.20E-16 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01203 - - qsu:112018313 288.115