Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01235 ATGGCTGCTTCTGTTTCTGGGTCTCTGGGGGTTTGCCTTCCATGCTCTACCAAAATTTCTTCCCGACCCACTTCCCGATCTTCTGCTGTCTGTTGTGTGAAAATGGCGGTGTCTCTCGATGAGAAGAAAAACTTCACCTTGAAAAAGTCTGAGGAAGCCTTCAATGCTGCCAAGGAGCTGATGCCTGGAGGTGTGAATTCTCCAGTTCGTGCCTTTAAATCTGTTGGCGGACAACCGATTGTAATCGACAGGGTCAAAGGGTCCCACATGTGGGATATAGACGGGAATGAATACATTGACTATGTCGGTTCTTGGGGACCGGCAATAATTGGCCATGCTGATGATGAGGTACTCGCAGCCCTCACGGAAACGATGAAGAAAGGAACGAGCTTTGGAGCTCCATGCCTTCTCGAAAATGTTTTGGCAGAGATGGTGATATCAGCTGTTCCAAGTATAGAAATGGTTCGATTTGTTAACTCGGGAACTGAAGCATGCATGGGAGTGCTACGGCTGGCCCGTGCTTTCACTGGAAAACAAAAGATCGTTAAATTTGAGGGATGCTATCATGGCCATGCTGATCCGTTTCTCGTTAAGGCCGGTAGCGGAGTTGCCACATTAGGTCTCCCTGACTCTCCAGGTGTACCAAAGGCAGCTACCTCAGAAACGCTCACTGCTCCATTCAATGACTTTTCTGCAGTGGAGGAACTATTCAAAACCCACAAAGGAGAAATTGCAGCTATTATACTAGAACCCGTCGTTGGAAACTCTGGTTTTATTCCCCCGAGGCCTGATTTCCTCGATGCCATTCGCGAAATCACCCGAGAAAATGACGCACTTCTCATCTTTGATGAGGTTATGACTGGATTCCGCATATCTTATGGTGGAGCTCAGGAGTACTTCAAAATAACACCGGATTTGACTACTTTGGGGAAGATCATTGGAGGTGGACTGCCAGTAGGAGCCTATGGAGGGCGGAGAGAGATATTGGAGATGGTGGCTCCGGCTGGACCCATGTACCAAGCCGGGACCTTGAGTGGAAACCCATTAGCCATGACTGCAGGGATACACACCCTAAAGAGGCTGAAGGAAACCGGAACTTATGCGTATCTAAATAAAATAACGGGAGAACTTGTTAAAGGCATTTTAGACGCAGGAAAGAAGACGGGCCACGAAATATGTGGGGGCCACATTAATGGGATGTTCGGGTTTTTCTTCACGGAGGGACCCGTTTACAACTTCGACGATGCAAAAAAGAGTGATACTGCTAAATTTGCCAAGTTTTATCAGGGAATGTTGAGGGAAGGAGTGTATTTCGCTCCCTCGCAGTTTGAAGCGGGGTTTACAAGCTTGGCACACTCTTCCCTTGATATCCAGCAGACGGTAGCTGCAGCCGAGAAGGTTTTGAGGCAGTTG 1413 48.12 MAASVSGSLGVCLPCSTKISSRPTSRSSAVCCVKMAVSLDEKKNFTLKKSEEAFNAAKELMPGGVNSPVRAFKSVGGQPIVIDRVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDEVLAALTETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKQKIVKFEGCYHGHADPFLVKAGSGVATLGLPDSPGVPKAATSETLTAPFNDFSAVEELFKTHKGEIAAIILEPVVGNSGFIPPRPDFLDAIREITRENDALLIFDEVMTGFRISYGGAQEYFKITPDLTTLGKIIGGGLPVGAYGGRREILEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLKETGTYAYLNKITGELVKGILDAGKKTGHEICGGHINGMFGFFFTEGPVYNFDDAKKSDTAKFAKFYQGMLREGVYFAPSQFEAGFTSLAHSSLDIQQTVAAAEKVLRQL 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20286451 20288902 - Bma031020 Bma03g01235 79908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01235 471 Gene3D - 115 363 IPR015421 GO:0003824
Bma03g01235 471 Pfam Aminotransferase class-III 78 392 IPR005814 GO:0008483|GO:0030170
Bma03g01235 471 ProSitePatterns Aminotransferases class-III pyridoxal-phosphate attachment site. 280 316 IPR005814 GO:0008483|GO:0030170
Bma03g01235 471 PANTHER GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 16 469 - -
Bma03g01235 471 SUPERFAMILY PLP-dependent transferases 47 471 IPR015424 -
Bma03g01235 471 TIGRFAM hemL: glutamate-1-semialdehyde-2,1-aminomutase 49 470 IPR004639 GO:0033014|GO:0042286
Bma03g01235 471 PANTHER BNAA09G06670D PROTEIN 16 469 - -
Bma03g01235 471 CDD OAT_like 54 468 IPR005814 GO:0008483|GO:0030170
Bma03g01235 471 Gene3D Aspartate Aminotransferase, domain 1 52 464 IPR015422 GO:0003824
Bma03g01235 471 Hamap Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 49 471 IPR004639 GO:0033014|GO:0042286
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01235 K01845 hemL; glutamate-1-semialdehyde 2,1-aminomutase [EC:5.4.3.8] - csv:101207399 822.002
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01235 Bma06g00273 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01235 Bma-Chr3:20286451 Bma14g00199 Bma-Chr14:2498113 2.45E-15 dispersed
Bma03g01235 Bma-Chr3:20286451 Bma06g00273 Bma-Chr6:3772433 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g68 . Blo16g00282 . . . Bpe13g00193 Bma06g00273 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01586 Bda14g01345 . Bpe15g00234 Bma03g01235 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006338 3 1 2 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01235 Bma_Chr03 FPKM 25.017757 26.284168 4.385062 4.802933 19.959249 20.003056 19.619186 0.0 0.0 0.0