Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01239 ATGGAAACTCGGGTAAAGAGAGAAATTACGGAAGTATCTATGTCGAAACCGCCGGGGAACGATGGTTTTTCGAAGGCTCCTCTAGCTTACATTGAACTTAGTAGTAGCGGCGATTCGGATTCCAACGGTGATGATTATGCCAATTCAGGGGACGAATCGAACAATGAAACTCCGGGTGGGGGATTCGGTGGAGGTTCTTCGAAGAGGAGGAGACTGAGTGAGTTAGGAGTGGTTTTGCCGGTTGGGTTTCTAAAGCCTCTTCATCTGCATGACAAACCAGAAGAAGTGCGTCTGTTGCTGCCGCCTGAATCTGACGTTAAAGGGCAGGATTCCGGTGCGGGGTTTTGTGTAAGTGCTAGAGGTTCTAATACTAAGCAGTTTTGGAAAGCCGGAGATTATGAAGGTGCTCCATGCGGTGATTGGGATTTGGCGTCAGTGGGAATGGATCATGTTAGGGTTCATCCTAAGTTTCTCCATTCCAATGCAACCAGTCATAAATGGGCGCTTGGAGCTTTTGCTGAGCTTTTGGACAACTCATTAGACGAGGTCTGCAATGGGGCTACATATGTTAATGTAGATATGCTTCTGAATAAAAAAGATGGCAGCAGAATGCTGTTAATTGAAGGTAGCTGCAGATCTCTTTTTTTGGCTGCAGATAATGGTGGTGGAATGGATCCTGATAAAATGCGTCACTGCATGTCATTAGGTTATTCTGCAAAAAGCAAGCAAGCAAATACCATTGGACAATATGGAAATGGCTTTAAGACAAGTACCATGAGGCTTGGTGCTGATGTGATTGTGTTCTCACGATGTCATGGCAGAGATGGGAAAAGTTCCTCACAGAGCATTGGCTTATTGTCCTATACGTTTCTAAGGAGTACTGGAAAAGAAGATATTGTGGTTCCCATGCTTGACTATATAAGAGGAGGAGGAGAGTGGAAAAAGATGATAAGGTCTAGCGCTGCTGATTGGGATATAAATATAGAAACTATTGTTCTGTGGTCTCCATTTAACAGTGAAGCAGAACTTCTTCGGCAATTTCATATGATGAAAGATCATGGAACACGAGTAATTATATACAATCTTTGGGAAGATGACCAAGGACTGCTGGAGCTTGACTTCGATGCTGATTTTCATGATATACAAATCAGGGGTGTCAACCGAGATGAAAAGAATATACAAATGGCTCAACAGTTTCCTAATTCTAGGCATTTTTTGACTTATCGGCATTCATTAAGAAGTTATGCATCAATTCTCTACCTTAGGCTTCCTCCTGGCTTCCGCATTATTCTACGAGGCAAGGATGTTGAACACCATAATATAGTGAATGATATGATGATGTCTCAAGAAATCACCTATCGACCACAGACAGGTCCTGATGCGGCCATAAAGGATATTAATATGGTTGCTGTTGTGACCATTGGATTTGTGAAAGATGCTAAGTATCATATTGATGTTCAGGGATTCAATGTATATCACAAGAATAGACTAATTAAGCCATTTTGGAGGCTCTGGAATGCTGCTGGAAGTGATGGTCGTGGAGTAATAGGTGTATTAGAAGCCAATTTTGTTGAACCAGCTCATGATAAGCAGGGTTTTGAGCGAACAACAGTTCTTGGAAGACTTGAAGCACGGTTAATACAGATGCAAAAAACATATTGGTTTGCTTGTTGTCTTTTCCTTTAG 1686 42.17 METRVKREITEVSMSKPPGNDGFSKAPLAYIELSSSGDSDSNGDDYANSGDESNNETPGGGFGGGSSKRRRLSELGVVLPVGFLKPLHLHDKPEEVRLLLPPESDVKGQDSGAGFCVSARGSNTKQFWKAGDYEGAPCGDWDLASVGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVNVDMLLNKKDGSRMLLIEGSCRSLFLAADNGGGMDPDKMRHCMSLGYSAKSKQANTIGQYGNGFKTSTMRLGADVIVFSRCHGRDGKSSSQSIGLLSYTFLRSTGKEDIVVPMLDYIRGGGEWKKMIRSSAADWDINIETIVLWSPFNSEAELLRQFHMMKDHGTRVIIYNLWEDDQGLLELDFDADFHDIQIRGVNRDEKNIQMAQQFPNSRHFLTYRHSLRSYASILYLRLPPGFRIILRGKDVEHHNIVNDMMMSQEITYRPQTGPDAAIKDINMVAVVTIGFVKDAKYHIDVQGFNVYHKNRLIKPFWRLWNAAGSDGRGVIGVLEANFVEPAHDKQGFERTTVLGRLEARLIQMQKTYWFACCLFL 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20377532 20382252 - Bma017691.1 Bma03g01239 79912

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01239 561 MobiDBLite consensus disorder prediction 1 67 - -
Bma03g01239 561 Pfam Morc6 ribosomal protein S5 domain 2-like 410 554 IPR041006 -
Bma03g01239 561 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 170 364 IPR036890 -
Bma03g01239 561 MobiDBLite consensus disorder prediction 34 61 - -
Bma03g01239 561 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 1 558 IPR045261 GO:0016887
Bma03g01239 561 Gene3D - 155 366 IPR036890 -
Bma03g01239 561 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 170 279 - -
Bma03g01239 561 PANTHER PROTEIN MICRORCHIDIA 7 1 558 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01239 - - - hbr:110671851 810.446
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01239 Bma-Chr3:20377532 Bma08g00093 Bma-Chr8:1118659 4.46E-135 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g69 . . . . . . . . . . . Cma11g00020 . Car11g00019 . . Cpe04g01628 Bhi02g00471 . . . Hepe09g0031 . . Cla06g01760 Cam06g1953 Cec06g2003 Cco06g2008 Clacu06g1911 Cmu06g1851 Cre06g2664 . . Cone13ag0239 . . . . . . . . Bda14g01346 . Bpe15g00232 Bma03g01239 . . . Cmo11g00020 . . . . . . . . . . . . . . . . . . . . Lsi06g01658 Csa01g00034 . Cme02g02086
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002795 1 2 1 1 1 2 1 2 2 2 2 2 1 2 3 1 2 1 1 2 2 1 2 3 2 1 2 4 3 2 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01239 Bma_Chr03 FPKM 6.548451 7.299964 0.932832 0.622233 0.0 0.0 0.0 0.0 0.0 0.0