Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01250 ATGAGTCTGGTTGGTCGTCATCATAATCTTCTTCTTCTTCCACTCTGTTCGAATTCCAAGCAATCTACTGCAAAAATCCCTTCTCCCCTCCAAACCCTTAAAGCTTCTCTTCCAACACCATCTACGAAGTCCTTTCTTTTTTCCAACCTTCTCACCATAGCCGTCTCTGTTTCCTTGGGCTCGCCATTTCCATCTCTAGCTATCCCATCTCTCAACTCTCAGTACTCTCCCCTCTCTCTCACGACCCCATTTTCTCAATCCAAGAATCTCCAGATTGGACTCGAAAATGGGAAAGTTAGGCCCTGCCCCTCAACCAATCCAGGTTGCGTGTCTACAAACCCAAAATCTTCAAATTTTGCATTCCCACTGAGGATTCCAGAAAGTTTTTCCGGGAGTCCAATCCAGGAATTGGAGAAAGCAATCCTTAAAACTCAGAAAAATGCAACAATCCAGGCCGTGGAAGACAGCAAAGATGGTCCTTATTTGGTGATTGTCTCAGGCAAGTATATACGAGCCGAAGTTGACGGAGGCTTTGGCCGAGACGTGATTGAGCTTTTGGTGAAAGGAGATGTTGTTGCTTACAGGACCATGGCGACAAAAGTGACGTATATTTATCCCTTCACTACATCTTTAGGCGACTCGAAAGGACAGGAAGAGCGTATGAAGAAGATTATAGACGAATTGGGCTGGTATGCTCCGAGTTTTGATTCCATGGATTAA 720 45.0 MSLVGRHHNLLLLPLCSNSKQSTAKIPSPLQTLKASLPTPSTKSFLFSNLLTIAVSVSLGSPFPSLAIPSLNSQYSPLSLTTPFSQSKNLQIGLENGKVRPCPSTNPGCVSTNPKSSNFAFPLRIPESFSGSPIQELEKAILKTQKNATIQAVEDSKDGPYLVIVSGKYIRAEVDGGFGRDVIELLVKGDVVAYRTMATKVTYIYPFTTSLGDSKGQEERMKKIIDELGWYAPSFDSMD 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20825567 20826856 + Bma017712.1 Bma03g01250 79923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01250 239 PANTHER THYLAKOID LUMENAL 17.9 KDA PROTEIN, CHLOROPLASTIC 14 239 IPR037734 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01250 - - - jre:108994291 303.908
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g89 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0984 Cone16ag0014 . . . Csa01g00973 . . . . . . . . Bma03g01250 . . . . . . . . . . . . . . . . . Cla03g00360 Cam03g0380 Cec03g0366 Cco03g0381 Clacu03g0379 Cmu03g0984 Cre03g0676 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010285 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01250 Bma_Chr03 FPKM 10.432653 10.38998 20.992533 21.192356 15.250774 15.320605 16.32299 19.661203 19.705959 17.941385