Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma03g01251 | TTTGGCAAAAATCCAGAGACAGTAACCCCAAATACCATCTCTACGCCCACCCAAATGGAGAGCAATCAGCAAGCTCAATCTTCTTCATACCCGACAGCTCAGCCTCCTCCTCCCCCGTCTCAATTTCACCATCTTCTACAGCAGCAACAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAGGAAATCGAACAGGTTAATGAGTTCAAGAACCACCAGCTCCCCCTTGCTCGAATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGTATGATCTCCTCCGAAGCCCCGATTTTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGAACTCTGCAGAAGAACGATATATCGGCGGCGATTACGAGGACTGATATCTTCGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATCAAGGATGAGAGTGGGTTGGAAGGTGTGGTTGGGGCTACTGCGAGTGGCGTACCGTACTATTACCCTCCTTTAGGGCAGCCGGCAGGGGCTCCAGCTGGGATGATGATCGGGAGGCCGGCCATGGATCCCACCGGAATGTACATGCAGCCGCCTTCTCAGGCGTGGCAGTCAGTATGGCAGACTCCGCCTGAAGATGGGACATATGGGAGTGGAGGAAACAGCGGACTTGGCAATCTTAATGGACAAAGAGATTTCGCCAAGGACAGCGTTCGTCTTGTCAAGAGGTGTCACAAGCCTGATCGTAAAGAGTTCACCAAGGTTGCGTTTCGTACGGCGATCGGCTTTGTGGTGATGGGGTTCGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTCGGTTCTGGTTAA | 888 | 51.58 | FGKNPETVTPNTISTPTQMESNQQAQSSSYPTAQPPPPPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDESGLEGVVGATASGVPYYYPPLGQPAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQTPPEDGTYGSGGNSGLGNLNGQRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG | 295 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 20829954 | 20833455 | + | Bma017713.1 | Bma03g01251 | 79924 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma03g01251 | 295 | Pfam | SecE/Sec61-gamma subunits of protein translocation complex | 239 | 291 | IPR001901 | GO:0006605|GO:0006886|GO:0016020 | |
Bma03g01251 | 295 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 | 21 | 237 | - | - | |
Bma03g01251 | 295 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Bma03g01251 | 295 | SUPERFAMILY | Preprotein translocase SecE subunit | 234 | 291 | IPR023391 | - | |
Bma03g01251 | 295 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Bma03g01251 | 295 | Gene3D | Preprotein translocase SecE subunit | 235 | 294 | IPR023391 | - | |
Bma03g01251 | 295 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 21 | 237 | - | - | |
Bma03g01251 | 295 | TIGRFAM | secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic | 238 | 292 | IPR008158 | GO:0008320|GO:0015031|GO:0016020 | |
Bma03g01251 | 295 | ProSitePatterns | Protein secE/sec61-gamma signature. | 240 | 268 | IPR001901 | GO:0006605|GO:0006886|GO:0016020 | |
Bma03g01251 | 295 | Gene3D | Histone, subunit A | 40 | 152 | IPR009072 | GO:0046982 | |
Bma03g01251 | 295 | Hamap | Protein translocase subunit SecE [secE]. | 235 | 290 | IPR001901 | GO:0006605|GO:0006886|GO:0016020 | |
Bma03g01251 | 295 | SUPERFAMILY | Histone-fold | 23 | 146 | IPR009072 | GO:0046982 | |
Bma03g01251 | 295 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 74 | 137 | IPR003958 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma03g01251 | Bma12g01083 | CCT | |
Bma03g01251 | Bma06g00261 | CCT | |
Bma03g01251 | Bma12g01083 | ECH | |
Bma03g01251 | Bma06g00261 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma03g00499 | Bma-Chr3:3919350 | Bma03g01251 | Bma-Chr3:20829954 | 4.08E-18 | dispersed | |
Bma03g01251 | Bma-Chr3:20829954 | Bma08g00818 | Bma-Chr8:45893581 | 2.16E-62 | dispersed | |
Bma01g00010 | Bma-Chr1:250604 | Bma03g01251 | Bma-Chr3:20829954 | 2.00E-08 | transposed | |
Bma06g00262 | Bma-Chr6:3628284 | Bma03g01251 | Bma-Chr3:20829954 | 1.80E-129 | transposed | |
Bma03g01251 | Bma-Chr3:20829954 | Bma06g00261 | Bma-Chr6:3602433 | 1.07E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57087 | PF00808 | CBFD_NFYB_HMF | 9.80E-18 | CL0012 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma03g01251 | - | - | csv:101213576 | 322.013 |