Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01251 TTTGGCAAAAATCCAGAGACAGTAACCCCAAATACCATCTCTACGCCCACCCAAATGGAGAGCAATCAGCAAGCTCAATCTTCTTCATACCCGACAGCTCAGCCTCCTCCTCCCCCGTCTCAATTTCACCATCTTCTACAGCAGCAACAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAGGAAATCGAACAGGTTAATGAGTTCAAGAACCACCAGCTCCCCCTTGCTCGAATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGTATGATCTCCTCCGAAGCCCCGATTTTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGAACTCTGCAGAAGAACGATATATCGGCGGCGATTACGAGGACTGATATCTTCGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATCAAGGATGAGAGTGGGTTGGAAGGTGTGGTTGGGGCTACTGCGAGTGGCGTACCGTACTATTACCCTCCTTTAGGGCAGCCGGCAGGGGCTCCAGCTGGGATGATGATCGGGAGGCCGGCCATGGATCCCACCGGAATGTACATGCAGCCGCCTTCTCAGGCGTGGCAGTCAGTATGGCAGACTCCGCCTGAAGATGGGACATATGGGAGTGGAGGAAACAGCGGACTTGGCAATCTTAATGGACAAAGAGATTTCGCCAAGGACAGCGTTCGTCTTGTCAAGAGGTGTCACAAGCCTGATCGTAAAGAGTTCACCAAGGTTGCGTTTCGTACGGCGATCGGCTTTGTGGTGATGGGGTTCGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTCGGTTCTGGTTAA 888 51.58 FGKNPETVTPNTISTPTQMESNQQAQSSSYPTAQPPPPPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDESGLEGVVGATASGVPYYYPPLGQPAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQTPPEDGTYGSGGNSGLGNLNGQRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20829954 20833455 + Bma017713.1 Bma03g01251 79924

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01251 295 Pfam SecE/Sec61-gamma subunits of protein translocation complex 239 291 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma03g01251 295 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 21 237 - -
Bma03g01251 295 MobiDBLite consensus disorder prediction 1 30 - -
Bma03g01251 295 SUPERFAMILY Preprotein translocase SecE subunit 234 291 IPR023391 -
Bma03g01251 295 MobiDBLite consensus disorder prediction 1 42 - -
Bma03g01251 295 Gene3D Preprotein translocase SecE subunit 235 294 IPR023391 -
Bma03g01251 295 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 21 237 - -
Bma03g01251 295 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 238 292 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bma03g01251 295 ProSitePatterns Protein secE/sec61-gamma signature. 240 268 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma03g01251 295 Gene3D Histone, subunit A 40 152 IPR009072 GO:0046982
Bma03g01251 295 Hamap Protein translocase subunit SecE [secE]. 235 290 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma03g01251 295 SUPERFAMILY Histone-fold 23 146 IPR009072 GO:0046982
Bma03g01251 295 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 137 IPR003958 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01251 - - - csv:101213576 322.013
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01251 Bma12g01083 CCT
Bma03g01251 Bma06g00261 CCT
Bma03g01251 Bma12g01083 ECH
Bma03g01251 Bma06g00261 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00499 Bma-Chr3:3919350 Bma03g01251 Bma-Chr3:20829954 4.08E-18 dispersed
Bma03g01251 Bma-Chr3:20829954 Bma08g00818 Bma-Chr8:45893581 2.16E-62 dispersed
Bma01g00010 Bma-Chr1:250604 Bma03g01251 Bma-Chr3:20829954 2.00E-08 transposed
Bma06g00262 Bma-Chr6:3628284 Bma03g01251 Bma-Chr3:20829954 1.80E-129 transposed
Bma03g01251 Bma-Chr3:20829954 Bma06g00261 Bma-Chr6:3602433 1.07E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g101 . Blo16g00272 Bda06g00725 . Bpe12g00479 Bpe13g00200 Bma06g00261 Bma12g01083 Cmo13g00841 Cmo18g00222 . . . . . Cpe20g00303 . Bhi02g00520 . . . . . . . . . . . . . Cone2ag0981 Cone16ag0015 Cone13ag0226 Cone19ag0211 Lsi02g00510 Csa01g00972 Chy12g01161 Cme12g01585 . Blo15g00206 Bda11g01596 Bda14g01358 Bpe07g00892 Bpe15g00222 Bma03g01251 . Sed08g2430 . . Cma13g00811 Cma18g00314 Car13g00657 Car18g00233 Cpe09g00957 . Bhi08g01503 Tan05g2975 Cmetu12g2007 Lac10g0589 Hepe07g2115 . . Cla03g00359 Cam03g0379 Cec03g0365 . Clacu03g0378 Cmu03g0983 Cre03g0675 Lsi06g01644 Csa01g00053 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 6.2e-73 270.8
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.7 2.1e-65 245.7
Bma08g00818 . 61 196 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.5 1.5e-50 196.4
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.0 3.7e-49 191.8
Bma14g01344 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 74.2 1.1e-50 196.8
Bma08g00818 . 5 159 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.2e-47 186.8
Bma03g01251 CCT,ECH 53 151 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.1e-41 166.0
Bma06g00262 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 4.7e-41 164.9
Bma14g01344 . 72 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.1 5.6e-52 201.1
Bma08g00818 . 61 191 CCAAT-HAP5 Transcription Factor Family AT1G54830 74.0 6.9e-50 194.1
Bma03g01251 CCT,ECH 53 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.3 2.2e-48 189.1
Bma06g00262 . 39 176 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.9 8.4e-48 187.2
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 5.1e-65 244.6
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.9 2.7e-58 222.2
Bma08g00818 . 61 190 CCAAT-HAP5 Transcription Factor Family AT5G63470 70.5 2.8e-47 185.7
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.3 5.0e-44 174.9
Bma08g00818 . 21 189 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 1.7e-63 239.2
Bma03g01251 CCT,ECH 53 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.7 1.2e-48 189.9
Bma14g01344 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.3 4.5e-48 188.0
Bma06g00262 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.4 7.7e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005355 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57087 PF00808 CBFD_NFYB_HMF 9.80E-18 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01251 Bma_Chr03 FPKM 0.0 0.0 3.702875 2.573243 3.794107 2.998192 2.947321 0.0 0.0 0.0