Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01251 TTTGGCAAAAATCCAGAGACAGTAACCCCAAATACCATCTCTACGCCCACCCAAATGGAGAGCAATCAGCAAGCTCAATCTTCTTCATACCCGACAGCTCAGCCTCCTCCTCCCCCGTCTCAATTTCACCATCTTCTACAGCAGCAACAGCAGCAGCTCCAGATGTTCTGGTCCTACCAGCGCCAGGAAATCGAACAGGTTAATGAGTTCAAGAACCACCAGCTCCCCCTTGCTCGAATCAAGAAGATTATGAAGGCCGATGAGGACGTCCGTATGATCTCCTCCGAAGCCCCGATTTTGTTTGCCAAGGCCTGCGAGCTCTTCATCCTCGAGCTCACGATTAGGTCGTGGCTTCACGCGGAGGAAAACAAGAGGAGAACTCTGCAGAAGAACGATATATCGGCGGCGATTACGAGGACTGATATCTTCGATTTTTTGGTTGATATTGTTCCGAGAGATGAGATCAAGGATGAGAGTGGGTTGGAAGGTGTGGTTGGGGCTACTGCGAGTGGCGTACCGTACTATTACCCTCCTTTAGGGCAGCCGGCAGGGGCTCCAGCTGGGATGATGATCGGGAGGCCGGCCATGGATCCCACCGGAATGTACATGCAGCCGCCTTCTCAGGCGTGGCAGTCAGTATGGCAGACTCCGCCTGAAGATGGGACATATGGGAGTGGAGGAAACAGCGGACTTGGCAATCTTAATGGACAAAGAGATTTCGCCAAGGACAGCGTTCGTCTTGTCAAGAGGTGTCACAAGCCTGATCGTAAAGAGTTCACCAAGGTTGCGTTTCGTACGGCGATCGGCTTTGTGGTGATGGGGTTCGTTGGATTCTTCGTCAAGTTGATCTTCATTCCGATCAATAACATCATCGTCGGTTCTGGTTAA 888 51.58 FGKNPETVTPNTISTPTQMESNQQAQSSSYPTAQPPPPPSQFHHLLQQQQQQLQMFWSYQRQEIEQVNEFKNHQLPLARIKKIMKADEDVRMISSEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDISAAITRTDIFDFLVDIVPRDEIKDESGLEGVVGATASGVPYYYPPLGQPAGAPAGMMIGRPAMDPTGMYMQPPSQAWQSVWQTPPEDGTYGSGGNSGLGNLNGQRDFAKDSVRLVKRCHKPDRKEFTKVAFRTAIGFVVMGFVGFFVKLIFIPINNIIVGSG 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 20829954 20833455 + Bma017713.1 Bma03g01251 79924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01251 295 Pfam SecE/Sec61-gamma subunits of protein translocation complex 239 291 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma03g01251 295 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 21 237 - -
Bma03g01251 295 MobiDBLite consensus disorder prediction 1 30 - -
Bma03g01251 295 SUPERFAMILY Preprotein translocase SecE subunit 234 291 IPR023391 -
Bma03g01251 295 MobiDBLite consensus disorder prediction 1 42 - -
Bma03g01251 295 Gene3D Preprotein translocase SecE subunit 235 294 IPR023391 -
Bma03g01251 295 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 21 237 - -
Bma03g01251 295 TIGRFAM secE_euk_arch: protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic 238 292 IPR008158 GO:0008320|GO:0015031|GO:0016020
Bma03g01251 295 ProSitePatterns Protein secE/sec61-gamma signature. 240 268 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma03g01251 295 Gene3D Histone, subunit A 40 152 IPR009072 GO:0046982
Bma03g01251 295 Hamap Protein translocase subunit SecE [secE]. 235 290 IPR001901 GO:0006605|GO:0006886|GO:0016020
Bma03g01251 295 SUPERFAMILY Histone-fold 23 146 IPR009072 GO:0046982
Bma03g01251 295 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 74 137 IPR003958 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g01251 Bma12g01083 CCT
Bma03g01251 Bma06g00261 CCT
Bma03g01251 Bma12g01083 ECH
Bma03g01251 Bma06g00261 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00499 Bma-Chr3:3919350 Bma03g01251 Bma-Chr3:20829954 4.08E-18 dispersed
Bma03g01251 Bma-Chr3:20829954 Bma08g00818 Bma-Chr8:45893581 2.16E-62 dispersed
Bma01g00010 Bma-Chr1:250604 Bma03g01251 Bma-Chr3:20829954 2.00E-08 transposed
Bma06g00262 Bma-Chr6:3628284 Bma03g01251 Bma-Chr3:20829954 1.80E-129 transposed
Bma03g01251 Bma-Chr3:20829954 Bma06g00261 Bma-Chr6:3602433 1.07E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57087 PF00808 CBFD_NFYB_HMF 9.80E-18 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01251 - - csv:101213576 322.013