Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01256 ATGACTACCACGACTACTAATGTTGGCGGCGGTGATGAGGATAGGGTTTTGGCCGCTGCGCAGCAGATCTTGAAGAGTCTAAATGCTCCGAAGGAGGTTAGGGAAGATATGCTTTTGATCTTCTCGAATTTCGATAATCGTCTTTCGAATATCACTCAGTTGATCAATAGTGAGGATATGAAGAACGAGAACCGTTACGAGGCGGCTGAAAAGGTGATTCTTCGCTGGGAGTCCAATTCGGATGCTTCGAGGAATTCTCTTCATTGGGAGGAGTCGCCGGATGAGGCGGCTGAATATTTGTCGGCTGTGGATGAAGTGCTCCAGTTGATTGAGGATCTTTCGCTTCGGTCGGATTCTTCGGAGATTGTAGACCGTGCCTCGGACACAATCCAGGTTGCCATGGCCAGGCTTGAGGAAGAATTCCGCCATATCTTGATTCGAAGCACAGTCCCTCTAGATGCTGATCACCTCCATGTTTCAATCCGCAGGGTCTCACTATCTTTTGCATCCAACTATGGAGATATTGACGATGAATTTGAGAGCTTTGAGGAGGTTGATCGTGATTCTGGACGATTTCATGAGAGAGGTGCGAGTTTGGGGGATGACGTGTGGGTTGATTTGATACATCCCGAAGCAGTCGTGGAATTGAAAGAGATTGCAAACAGGATGGTACGCTCTGGTTATGAAAGAGAGTGTGTTCAGGTCTATAGCACCATCCGGCGGGAAGTTTTGGACGAATGTCTAGGGATTCTTGGAATTGAAAAGCTGAGCATTGAGGAGGTCCAGAAAATAGACTGGAAAATTTTGGACGAGAAAATGAAGAAATGGAGTCTAGCAGTTAAAATTGTGGTTCGAGTGCTTTTCATGGGTGAAAAACGACTTTGTGATAATTTTTTTGATGGGTCTGATGTGTCTAAGGAGGTTTGCTTCAATGAGACTGCAAAAGGGTGTGTGATGCAGTTGTTGAATTTTGGGGAGGCGGTGGCCATTGGGGAAAGGTCCCCAGAGAAGTTATTTAGAATCTTGAATATGTATGATTCTTTGGCTAATGTTTTACCGGATTTACAAGCAATGGTTACTGATGAGTTTGTCATCAGCGAGGCACGTGAAGTGCTATCTGGCCTGGCAGAGGCATCCCGAGGGACCTTTGCGGTGTTCGAGAATGCTGTTCAGTGTGAGACATCAAAGAAGCCCATGATAAATGCTGAGATTCATCCTCTTACTCGTTATGTGATGAATTATGTAAGATTGCTTGTGGATTACCGTTCTATATTAGATTCACTCTTGGAAAATGGGGAAGAAGAATTGAATTGCGTAAAGAATGAGAATGGTGATAATTTTGAGTTAGACTACACGTCACCTTTAGCCCATCGCCTGTTTTTGTTGATATCATGTCTGGAAGCCAATCTTGAAGAGAAATCAAAACTTTATGGAGATGGGGCGATACAGTACGTATTTCTTATGAACAATATTTTATACATAGTTCAAAAGGTGAAAGATTCTGAGCTTCGCAAGCTATTGGGTGATAACTGGGTTCGGAAACGGCGCGGTAAGATTCGCCAGCTCGCAACCAGTTATATTCGAGCTTCTTGGACCAAGGTACTGTCTTATTTGAACGATGGAGCTGGTACTGGTGGGAGTTCAAGTAATGCCTTGAAGGTGGCTTTAAAGGAAAGACTCAAGAATTTCAATGCTGGATTTGAGGAAATCTATAGATCCCAGTCGGGTTGGAAAGTACATGATCCTCAACTTAGCGAAGATCTACGAATCTCTGTATCTGAGAAGGTCATTCCGGCTTACCGCTCCTTCATGGGGAAGTTTGAAAAGCAGCTAGAGAGTGGAAGACATGCTGAGAAGTATGTTAAATACACAGCAGATGATATAGGAAATTATCTGTTGGATTTGTTTGAAGGAACACCTCGCATTCTACACCACCTACGAAGAAAAAGTACATAA 1956 43.81 MTTTTTNVGGGDEDRVLAAAQQILKSLNAPKEVREDMLLIFSNFDNRLSNITQLINSEDMKNENRYEAAEKVILRWESNSDASRNSLHWEESPDEAAEYLSAVDEVLQLIEDLSLRSDSSEIVDRASDTIQVAMARLEEEFRHILIRSTVPLDADHLHVSIRRVSLSFASNYGDIDDEFESFEEVDRDSGRFHERGASLGDDVWVDLIHPEAVVELKEIANRMVRSGYERECVQVYSTIRREVLDECLGILGIEKLSIEEVQKIDWKILDEKMKKWSLAVKIVVRVLFMGEKRLCDNFFDGSDVSKEVCFNETAKGCVMQLLNFGEAVAIGERSPEKLFRILNMYDSLANVLPDLQAMVTDEFVISEAREVLSGLAEASRGTFAVFENAVQCETSKKPMINAEIHPLTRYVMNYVRLLVDYRSILDSLLENGEEELNCVKNENGDNFELDYTSPLAHRLFLLISCLEANLEEKSKLYGDGAIQYVFLMNNILYIVQKVKDSELRKLLGDNWVRKRRGKIRQLATSYIRASWTKVLSYLNDGAGTGGSSSNALKVALKERLKNFNAGFEEIYRSQSGWKVHDPQLSEDLRISVSEKVIPAYRSFMGKFEKQLESGRHAEKYVKYTADDIGNYLLDLFEGTPRILHHLRRKST 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21081145 21083100 + Bma017718.1 Bma03g01256 79929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01256 651 Pfam Exo70 exocyst complex subunit 274 633 IPR046364 GO:0000145|GO:0005546|GO:0006887
Bma03g01256 651 SUPERFAMILY Cullin repeat-like 73 637 IPR016159 -
Bma03g01256 651 Gene3D Exocyst complex component Exo70 72 643 - -
Bma03g01256 651 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 48 650 - -
Bma03g01256 651 PANTHER EXOCYST COMPLEX PROTEIN EXO70 48 650 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01256 K07195 EXOC7, EXO70; exocyst complex component 7 - mnt:21411514 937.176
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01256 Bma06g00256 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01893 Bma-Chr1:69735239 Bma03g01256 Bma-Chr3:21081145 6.62E-79 dispersed
Bma03g01256 Bma-Chr3:21081145 Bma06g00256 Bma-Chr6:3506836 0 dispersed
Bma07g00116 Bma-Chr7:1844124 Bma03g01256 Bma-Chr3:21081145 7.25E-99 dispersed
Bma08g00969 Bma-Chr8:48666134 Bma03g01256 Bma-Chr3:21081145 6.77E-94 dispersed
Bma14g00483 Bma-Chr14:5467529 Bma03g01256 Bma-Chr3:21081145 7.87E-104 dispersed
Bma01g01069 Bma-Chr1:11259933 Bma03g01256 Bma-Chr3:21081145 8.27E-145 transposed
Bma06g00151 Bma-Chr6:1957129 Bma03g01256 Bma-Chr3:21081145 5.59E-30 transposed
Bma12g01079 Bma-Chr12:43094469 Bma03g01256 Bma-Chr3:21081145 0 transposed
Bma03g01256 Bma-Chr3:21081145 Bma06g00255 Bma-Chr6:3501444 9.30E-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00906 . 10 648 EXO70 exocyst subunit family AT5G03540 75.9 2.4e-279 958.0
Bma01g02005 . 3 641 EXO70 exocyst subunit family AT5G03540 71.4 4.8e-264 907.1
Bma01g02005 . 3 641 EXO70 exocyst subunit family AT5G52340 78.5 1.3e-290 995.3
Bma08g00906 . 12 648 EXO70 exocyst subunit family AT5G52340 73.3 8.7e-271 929.5
Bma01g02005 . 147 634 EXO70 exocyst subunit family AT5G52350 62.4 6.8e-169 590.9
Bma08g00906 . 147 650 EXO70 exocyst subunit family AT5G52350 58.3 1.2e-160 563.5
Bma15g00313 BCT 7 607 EXO70 exocyst subunit family AT1G72470 63.6 8.8e-215 743.4
Bma09g00990 BCT 8 608 EXO70 exocyst subunit family AT1G72470 60.3 6.8e-199 690.6
Bma15g00313 BCT 1 605 EXO70 exocyst subunit family AT1G54090 62.0 1.1e-212 736.5
Bma09g00990 BCT 9 606 EXO70 exocyst subunit family AT1G54090 58.2 1.3e-197 686.4
Bma15g00313 BCT 3 606 EXO70 exocyst subunit family AT3G14090 63.8 4.8e-221 764.2
Bma09g00990 BCT 2 607 EXO70 exocyst subunit family AT3G14090 59.4 5.8e-203 704.1
Bma03g01256 CCT 13 650 EXO70 exocyst subunit family AT5G50380 61.4 3.1e-221 765.0
Bma06g00256 CCT 13 648 EXO70 exocyst subunit family AT5G50380 59.1 2.0e-217 752.3
Bma12g01079 . 13 639 EXO70 exocyst subunit family AT5G50380 56.9 2.7e-201 698.7
Bma04g00034 BCT 15 683 EXO70 exocyst subunit family AT4G31540 70.0 8.5e-280 959.5
Bma01g02121 BCT 6 674 EXO70 exocyst subunit family AT4G31540 67.7 2.9e-272 934.5
Bma01g02125 CCT 10 305 EXO70 exocyst subunit family AT4G31540 58.4 1.1e-106 384.4
Bma03g00313 . 42 630 EXO70 exocyst subunit family AT3G55150 51.2 1.6e-160 563.1
Bma14g00483 CCT 1 570 EXO70 exocyst subunit family AT3G55150 50.3 1.5e-153 540.0
Bma04g01661 . 1 199 EXO70 exocyst subunit family AT3G55150 55.1 5.1e-53 206.1
Bma03g00313 . 42 630 EXO70 exocyst subunit family AT2G39380 51.8 2.1e-163 572.8
Bma04g01661 . 1 200 EXO70 exocyst subunit family AT2G39380 54.6 5.8e-57 219.2
Bma04g01661 . 1 200 EXO70 exocyst subunit family AT3G09530 58.5 8.4e-56 215.3
Bma04g01661 . 1 201 EXO70 exocyst subunit family AT3G09520 62.9 7.0e-63 238.8
Bma11g00137 BCT,CCT 11 608 EXO70 exocyst subunit family AT5G59730 53.3 9.5e-169 590.5
Bma07g00116 BCT,CCT 4 578 EXO70 exocyst subunit family AT5G59730 50.1 1.1e-151 533.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01256 Bma_Chr03 FPKM 137.46106 151.707443 99.132439 96.628265 181.678284 176.065643 179.672852 132.87529 142.017136 134.589706