Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01260 ATGGCGGATGCGGTTCCACCACCGTCCAGATCCGCCACCAAACTCTTTTCTGATCCGTTTGACGACCAACCGCTTTGGTTTAAGCCCGACCTCTTCCTCTCGCCGAAATTCGACTCTGAATCTTACATCTACGAGCTTCGAACCTTTGTTCCTTTTGACACCCTCCGATCCCAGCTCCAGGCTCATCTTTCCTCCCTTAATCACGAGCTCATCGACTTGATCAACCGTGATTATGCAGATTTTGTTAATCTCAGCACCAAGCTTGTCGATGTCGATGCCGCTGTTGTGCGGATGCGCGCCCCGCTACTTGAGCTTAGAGAAAAGATCGAGCAGTTCAGGTTCTCTGTAGAAGGATCACTTGTGGCATTGCGGAATGGGTTGCGGCAGAGATCTGAAGCTGCATCGGCCAGGGAGGTCTTGGAATTGCTACTCGACACTTTTCACGTTGTCTCCAAGGTTGAGAAACTGATCAAGGAGCTGCCAACTGTGACGGAGGATTGGTCAAATGGAGATACAGATTCAAAGGAAAGGAATTTCTTGAGAAATGAAACATCCTTGCAACACGTTGAAAATGGGAAAAGTCTTAGAGAAACCCAAAGTATGTTGTTGGAAAGAATTGCTAGCGAAATGAATCGCCTAAAGTTCTACATTGCTCAGGCACAGAACCTACCTTTCATTCAAAACATGGAAAAGAGGATTCATTATGCCAGCATGTTACTGGATGCAAGCTTAGGACATTGTTTTGTCGATGGACTCGAACATCATGATGACAGTGCAATTTACAACTGCTTGAGGGCATATGCTGCCATTGACAACACCAGCAGTGCAGAAGAGATTTTTCGTACTACCACTGTGGCACCATTGGTTCACAAAATTATTGCTCATGGACTGACGGACATGGCCGCTGGTTCATCTGGAGACGACCTTGAGAATGATTATAAGCAGATCAAGGAATCCATTGATAAGAATTGCAAGTTCTTGATAGAAATTTCTTCAAGAGAAAATTCAGGATTTCTTGTATTTGACTTCCTGGCTAATTCAATTCTTAAAGAGGTTCTCTTGGCCGTCCAAAAAGGAAAACCAGGAGCTTTTTCTCCAGGAAGACCTACAGAGTTCTTAAGAAACTATAAGTCAAGCCTTGACTTTTTGTCTTTTCTAGAAGGCTACTGTCCCTCAAGATCTGCTATCACTAAATTTCGAGCGGAAGCTGTTTACAGTGACTTCTTGAAACAATGGAATATTGGAGTGTATTTCTCCTTGAGGTTTCAGGAAATCGCTGGTGCTTTAGATTCAGCACTCAATGCAGCAAGTCTAGTTCCTATTCAAAATTTACCCGCTGATGAAGTAAATTCTCAACATCTAACTTTGAAACAAAGTGTAACTCTGTTAGGGAGCTTGAGAGCCTGCTGGAGGGAAGATGTTTTTCTCCTGTCTTGCTCTGACAAACTACTTCGCTTATCCTTGCAGCTTGTTTCAAGATATTCAAATTGGTTATCAGCTGGACTTGCATCTCGCAAGGTAGCAAATACGAGCTCCAATACAGGATTTCAGTGGGCAGTTTCAGCTGCCCTTGATGATTACATTTATATTATTCATGACACGAACTATCTAGCTACGGAGGTCTGCAGTAATTTATTGGAACATGTCCTCCAGCTTTTATCTCCATACTCCACTGATATTCTTGACTCCGTGAAGCAAAGCATCTTACAGGGTGGGAAATTGTTGAATGATTTAGTTCCTCTTGTGATCAACTCCATAATTGAGACTCTAGTTACAAAGGCAGTCGAGGACTTGAGGCAGTTGAAGGGAATAACTGCTACTTATAGGATGACTAATAAACCTCTTCCAGTCAGACACTCACCCTATGTGACTGGGTTACTGCGACCTCTGAAGGTTTTGTTAGAAGGAGAGCGTGCAATCATGTATTTGAATAGGGAAACAAGAGATGCACTACTAATTGGAGCTGCAACTGAGATTACTGGTCGATATTATGAGTCAGTAGCAGACCATGTCAGCATGGCTAGGAAAACTGAGTCTTCTCTTCAAAAAATCAGACAGGGGGCACAAAGAAGAGCTGGAGCAAGCTCAGATATTGCAGACCAAAACGTTTCTGACATTGACAAAATGTATATGCCACTCTTTCTTGATATTCAGGAGTATGGGCGCAACCTTTTGGCTTTAGGCATTGAGGCAGAAAATATTTCCGCCTACAGATCCTTGTGGCAGTGTGTTGCCCCGCCAGATAGGCAAGGGGAGATCAAGTTTTAG 2268 43.52 MADAVPPPSRSATKLFSDPFDDQPLWFKPDLFLSPKFDSESYIYELRTFVPFDTLRSQLQAHLSSLNHELIDLINRDYADFVNLSTKLVDVDAAVVRMRAPLLELREKIEQFRFSVEGSLVALRNGLRQRSEAASAREVLELLLDTFHVVSKVEKLIKELPTVTEDWSNGDTDSKERNFLRNETSLQHVENGKSLRETQSMLLERIASEMNRLKFYIAQAQNLPFIQNMEKRIHYASMLLDASLGHCFVDGLEHHDDSAIYNCLRAYAAIDNTSSAEEIFRTTTVAPLVHKIIAHGLTDMAAGSSGDDLENDYKQIKESIDKNCKFLIEISSRENSGFLVFDFLANSILKEVLLAVQKGKPGAFSPGRPTEFLRNYKSSLDFLSFLEGYCPSRSAITKFRAEAVYSDFLKQWNIGVYFSLRFQEIAGALDSALNAASLVPIQNLPADEVNSQHLTLKQSVTLLGSLRACWREDVFLLSCSDKLLRLSLQLVSRYSNWLSAGLASRKVANTSSNTGFQWAVSAALDDYIYIIHDTNYLATEVCSNLLEHVLQLLSPYSTDILDSVKQSILQGGKLLNDLVPLVINSIIETLVTKAVEDLRQLKGITATYRMTNKPLPVRHSPYVTGLLRPLKVLLEGERAIMYLNRETRDALLIGAATEITGRYYESVADHVSMARKTESSLQKIRQGAQRRAGASSDIADQNVSDIDKMYMPLFLDIQEYGRNLLALGIEAENISAYRSLWQCVAPPDRQGEIKF 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 21339865 21344605 + Bma017727.1 Bma03g01260 79933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01260 755 Pfam COG complex component, COG2, C-terminal 589 717 IPR024603 -
Bma03g01260 755 PANTHER BNAA01G14200D PROTEIN 9 753 - -
Bma03g01260 755 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 9 753 IPR009316 GO:0007030|GO:0015031|GO:0016020
Bma03g01260 755 Pfam COG (conserved oligomeric Golgi) complex component, COG2 25 156 IPR024602 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01260 K20289 COG2; conserved oligomeric Golgi complex subunit 2 - rcu:8266319 1138.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01260 Bma-Chr3:21339865 Bma03g01262 Bma-Chr3:21566409 0 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g127 . . . . . . . . . . . . . . . Cpe20g00311 . . . . . . . . . . . . . . . . . Cone13ag0212 Cone19ag0201 . . . . . . . Bda14g01370 . Bpe15g00213 Bma03g01260 . . . . . . Car13g00648 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009590 1 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 0 1 1 1 1 2 4 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01260 Bma_Chr03 FPKM 1.168707 1.405511 0.624275 0.469256 0.0 0.306038 0.698504 84.098869 89.502342 86.006508