Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01280 ATGGCGACTGCAATGGTGGTTGAGCCGGCCAGAAAGCTACCGCGACCGGGTCGGGGGGGATTCGAAGCACACGGATTATCCGAGGAGGAAGCTCGGGTTCGAGCTATTGCCGAAATCGTTAATTCCATGGTCGACCTCTCCCGTAAAGGCCAAAACGTCGATCTGAATGCTCTCAAATCCGCAGCATGCCGTAAATATGGCCTTTCCCGAGCTCCGAAGCTGGTGGAGATGATAGCGGCACTGCCTGAGTCGGACCGTGAATTGCTGCTACCCAAGCTCCGGGCGAAGCCCGTTCGAACGGCCTCAGGCATTGCTGTGGTGGCTGTGATGTCTAAACCACACAGGTGCCCTCACATAGCTACGACTGGGAATATTTGTGTGTACTGCCCTGGAGGACCTGACTCAGACTTTGAGTATAGCACTCAATCGTACACTGGCTACGAGCCCACTAGTATGAGGGCAATTCGAGCAAGATATAACCCTTACATCCAGGCTAGGAGCAGGATAGATCAGTTGAAACGTTTGGGTCACAGTGTTGATAAGGTTGAGTTCATCCTAATGGGTGGCACTTTCATGTCATTGCCCACAGACTACCGTGACTACTTCATAAGGAATCTTCATGATGCCTTGTCTGGACACACTTCAGCTAACGTTGAGGAAGCAGTTTCCTACTCAGAGCATAGTGCAACTAAATGTATTGGCATGACTATTGAAACGAGACCTGATTATTGCCTGGGCCCACACTTGCGGCAGATGCTATCGTATGGTTGTACACGACTAGAGATTGGAGTTCAAAGCACATACGAGGACGTGGCTCGTGACACTAACAGAGGACATACAGTAGCTGCTGTAGCTGATTGCTTTTGCTTAGCAAAGGATGCTGGTTTCAAGGTTGTAGCACACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGAGACATGGAAAGTTTTAAGGAGTTCTTTGAGAGTCCTTTATTTAGAGCAGATGGGCTTAAAATTTATCCTACCCTTGTAATCCGTGGGACTGGGCTTTATGAACTTTGGAAAACTGGCAGGCATGACATTACTTTTCTTTGTGTATTTAATTGGTATAGAAATTACCCCCCTGAGCAACTTGTTGACATTATAGCGAGGATTCTGGCTTTGGTTCCTCCTTGGACACGAGTGTATAGAGTTCAGCGTGATATTCCTATGCCTCTAGTTACATCTGGGGTTGATAAAGGAAACCTTCGTGAGTTGGCTCTTGCTCGAATGGAAGACTTGGGATTGAAATGTCGTGATGTTAGAACAAGAGAAGCTGGAATCCAGGACATTCACCACAAAATTAAGCCAGACGAAGTTGAGCTTGTTCGTCGTGATTACACAGCAAATGAAGGGTGGGAAACTTTTTTGTCTTATGAAGATACACGCCAGGACATCCTTGTTGGGTTACTGCGTCTACGAAAATGTGGTCGAAATACTACTTGTCCCGAACTAATGGAGAGGTGCTCTATTGTTCGCGAGCTTCATGTTTATGGCACAGCTGTTCCTGTTCATGGGCGAGATGCTGACAAACTGCAACACCAGGGTTATGGTACACTTTTGATGGAGGAAGCAGAGCAAATTGCTCGAAGAGAGCATAGATCAACTAAAATAGCAGTTATTTCTGGCGTTGGGACTCGCCATTACTATCGGAAATTGGGGTATGAGCTTGAAGGTCCATACATGGTAAAAAAACTAGTTTGA 1728 46.82 MATAMVVEPARKLPRPGRGGFEAHGLSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPESDRELLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPTDYRDYFIRNLHDALSGHTSANVEEAVSYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFKEFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRHDITFLCVFNWYRNYPPEQLVDIIARILALVPPWTRVYRVQRDIPMPLVTSGVDKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHKIKPDEVELVRRDYTANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMERCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAEQIARREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKKLV 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 22763886 22768730 + Bma017753.1 Bma03g01280 79953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01280 575 Gene3D - 426 574 - -
Bma03g01280 575 ProSiteProfiles Radical SAM core domain profile. 99 400 IPR007197 GO:0003824|GO:0051536
Bma03g01280 575 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 349 570 IPR016181 -
Bma03g01280 575 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 51 574 IPR034687 -
Bma03g01280 575 SFLD ELP3-like 54 574 IPR034687 -
Bma03g01280 575 Pfam Radical SAM superfamily 124 312 IPR007197 GO:0003824|GO:0051536
Bma03g01280 575 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 2 574 IPR039661 -
Bma03g01280 575 SMART MiaB 106 362 IPR006638 GO:0003824|GO:0051536
Bma03g01280 575 PIRSF HAT_Elp3 21 575 IPR034687 -
Bma03g01280 575 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 424 575 IPR000182 GO:0016407
Bma03g01280 575 CDD Radical_SAM 113 356 - -
Bma03g01280 575 SFLD Radical SAM 54 574 IPR007197 GO:0003824|GO:0051536
Bma03g01280 575 Pfam Acetyltransferase (GNAT) family 428 563 IPR000182 GO:0016407
Bma03g01280 575 Pfam Radical_SAM C-terminal domain 330 420 IPR032432 -
Bma03g01280 575 PANTHER ELONGATOR COMPLEX PROTEIN 3 2 574 IPR034687 -
Bma03g01280 575 SUPERFAMILY Radical SAM enzymes 136 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01280 K07739 ELP3, KAT9; elongator complex protein 3 (tRNA uridine(34) acetyltransferase) [EC:2.3.1.-] - zju:107418157 1081.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g908 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0203 Cone19ag0191 . . . . . . Bda11g01622 . . Bpe15g00195 Bma03g01280 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012251 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 0 0 1 1 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57089 PF04055 Radical_SAM 2.90E-17 CL0036 Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01280 Bma_Chr03 FPKM 0.0 0.0 2.56229 0.92657 0.652531 0.0 1.172989 2.439625 0.0 2.368727