Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01289 ATGGCTCGCTATGGGCGAGTATACAAAGACAACTCAGAGAAGGAGAAACGGTTTCAGATTTTCAAGGAAAATGCGAAACGTGTTGAATTATTCAATAACATTCCAAACCAATCTTATAAGTTAGGTCTCAACCAGTTTGCAGACCTCACCAATGAAGAGTTCACAGCCTCCAGAAAAGGGTTCAAGGCTCATATGTGTTCTACGGAGAAAACATCTTTCAAATACGAGAATGTCTCAGCAGTGCCATCGACGGTGGATTGGAGAAAGAAAGGAGCTGTAACGCCCGTCAAGGATCAAGGACAGTGTGGATGTTGCTGGGCTTTTTCAGCAGTGGCAGCTATGGAGGGAATTAATCAGCTGTCAAATGGGAAGTTGATCTCTCTATCCGAGCAAGAGCTAGTCGACTGGGACGTCAAAGGTGTCGACCAAGGCTGTAATGGCGGTTTAATGGATGAAGCTTTCAAGTTCATCATAAACAATAAAGGGCTCAATACCGAAGTCAGTTATCCATATGTGGGCGAAGATCAAACCTGTAACTCCAAAAAGGAATCTAGGGATGCAGCAACCATAAATGGATACAAAGATGTTCCTGCAAACAGTGAAGACTCGCTACGAAAAGCGGTGGCACAGCAACCGGTTTCGGTCGCCATTGATGCTAGCAGATACGACTTTCAGTTATATGCTGGTGGGGTATTCACAGCAAGTTGTGGCACAGACCTTGATCACGGTGTTACGGCTGTCGGGTATGGAGTCACTTCCAATGGCACTAAATATTGGCTGGTGAAGAACTCTTGGGGAGTGACATGGGGCGAAGAAGGATACATAAGGATGCAAAGAGATGTAGATGCAAAAGAGGGGCTTTGTGGCATAGCAATGGAAGCCTCCTATCCTACAGCATGA 900 45.56 MARYGRVYKDNSEKEKRFQIFKENAKRVELFNNIPNQSYKLGLNQFADLTNEEFTASRKGFKAHMCSTEKTSFKYENVSAVPSTVDWRKKGAVTPVKDQGQCGCCWAFSAVAAMEGINQLSNGKLISLSEQELVDWDVKGVDQGCNGGLMDEAFKFIINNKGLNTEVSYPYVGEDQTCNSKKESRDAATINGYKDVPANSEDSLRKAVAQQPVSVAIDASRYDFQLYAGGVFTASCGTDLDHGVTAVGYGVTSNGTKYWLVKNSWGVTWGEEGYIRMQRDVDAKEGLCGIAMEASYPTA 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 24086479 24087455 - Bma017770.1 Bma03g01289 79962

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01289 299 CDD Peptidase_C1A 82 297 IPR039417 -
Bma03g01289 299 Pfam Cathepsin propeptide inhibitor domain (I29) 1 54 IPR013201 -
Bma03g01289 299 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 99 110 IPR000169 -
Bma03g01289 299 Gene3D Cysteine proteinases 1 299 - -
Bma03g01289 299 SUPERFAMILY Cysteine proteinases 1 298 IPR038765 -
Bma03g01289 299 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 240 250 IPR025660 -
Bma03g01289 299 PANTHER - 1 298 - -
Bma03g01289 299 SMART pept_c1 81 298 IPR000668 GO:0006508|GO:0008234
Bma03g01289 299 Pfam Papain family cysteine protease 81 298 IPR000668 GO:0006508|GO:0008234
Bma03g01289 299 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 258 277 IPR025661 -
Bma03g01289 299 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 1 298 - -
Bma03g01289 299 PRINTS Papain cysteine protease (C1) family signature 99 114 IPR000668 GO:0006508|GO:0008234
Bma03g01289 299 PRINTS Papain cysteine protease (C1) family signature 258 264 IPR000668 GO:0006508|GO:0008234
Bma03g01289 299 PRINTS Papain cysteine protease (C1) family signature 242 252 IPR000668 GO:0006508|GO:0008234
Bma03g01289 299 SMART Inhibitor_I29_2 1 54 IPR013201 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01289 - - K16292 tcc:18612122 483.796
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01289 Bma06g00236 CCT
Bma03g01289 Bma06g00236 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01289 Bma-Chr3:24086479 Bma08g00596 Bma-Chr8:37886243 2.13E-125 dispersed
Bma02g01292 Bma-Chr2:55109150 Bma03g01289 Bma-Chr3:24086479 4.37E-119 transposed
Bma03g01289 Bma-Chr3:24086479 Bma06g00236 Bma-Chr6:3153876 4.30E-113 wgd
Bma03g01289 Bma-Chr3:24086479 Bma08g00549 Bma-Chr8:33467663 1.47E-143 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g875 . Blo16g00242 . . . . Bma06g00236 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0184 . . . . . . Bda11g01632 . . Bpe15g00130 Bma03g01289 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001263 9 2 7 3 5 1 1 1 1 2 1 1 1 2 2 1 1 8 1 1 2 1 0 4 3 1 1 2 1 8 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01289 Bma_Chr03 FPKM 13.462632 13.949928 16.720068 17.001427 29.441803 30.123199 28.452314 17.839714 15.816992 15.988373