Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01302 ATGAGGAAGAGGGAGAGGGAGAATCCTTGCGGGGTTTGTGGCCATTATCACAAATACGAGGAAGGGGAAGTCTGCGGGATTTGTGGCCACCGCGTTCCGGTATCGTCGGAGAAAACGTCGATGCAAATAAGTGCCTTTCCGTCGGAGATCTTATCTGAATTTCTTTATTTGGGTAGCTATGACAACGCTTCGAGGCCCGAACTTCTCAAAACTCAAGGAATCTCCCGCGTTCTGAATAGTGTACCTGCTTGTCAAAATCTCTACAGGAATTCATTCATTTATCACTGCCTCGAATACGATAAATCTCTACCATTCGATGATGCAATTCAGTTTCTAGGTCTTTTAGGTCTTTTGAAAGTGTGGTCGAATAACATTCCTAGTGTATTCAACATTCTTAGTAATTATGCAGAGCAATGTGAAAGGGACAAAGCACGGGTTCTGGTACACTGCATGTCGGGGAAAAATAGGTCCCCGGCTATTGTAATAGCTTACTTGATGAAGAGCAAAGGGTGGAGACTCCAACAGAGCTATCTGTGGGTGAAAGAGCGGAGACCGTCTGTCGATATCACTGAAGCTGTGCATCAACAGTTGCAGGAGTTCGAGAAGAAAGCCTTTGGATCGGCCGACACGAACAAATCTAACATGCCGGTATTCCCTCCTGCAGTCTCCGGCACAACTTTTAGTTTCGGCTTCCCAAAAGTCAACGATCCAATTCCCGTTCCTGCTTTCAATACTGCTGGTGGGACGTCCATTTTTTCCCGTTCGACTTCAGACATCCCTCGCGAGTTTAAGTTCGGAGCCAGTCAACAAAACCCCAGTGGAAGCGATGTGCCGATGGATAGCTCTTAA 849 46.64 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPVSSEKTSMQISAFPSEILSEFLYLGSYDNASRPELLKTQGISRVLNSVPACQNLYRNSFIYHCLEYDKSLPFDDAIQFLGLLGLLKVWSNNIPSVFNILSNYAEQCERDKARVLVHCMSGKNRSPAIVIAYLMKSKGWRLQQSYLWVKERRPSVDITEAVHQQLQEFEKKAFGSADTNKSNMPVFPPAVSGTTFSFGFPKVNDPIPVPAFNTAGGTSIFSRSTSDIPREFKFGASQQNPSGSDVPMDSS 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25499425 25501689 - Bma017798.1 Bma03g01302 79975

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01302 282 Pfam Dual specificity phosphatase, catalytic domain 55 202 IPR000340 GO:0008138|GO:0016311
Bma03g01302 282 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Bma03g01302 282 Gene3D Protein tyrosine phosphatase superfamily 40 214 IPR029021 -
Bma03g01302 282 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 205 IPR029021 -
Bma03g01302 282 SMART dsp_5 46 203 IPR020422 GO:0006470|GO:0008138
Bma03g01302 282 MobiDBLite consensus disorder prediction 262 282 - -
Bma03g01302 282 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 282 - -
Bma03g01302 282 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 126 195 IPR000387 GO:0016311|GO:0016791
Bma03g01302 282 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 206 IPR020422 GO:0006470|GO:0008138
Bma03g01302 282 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 282 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01302 K04459 DUSP, MKP; dual specificity MAP kinase phosphatase [EC:3.1.3.16 3.1.3.48] - zju:107417407 409.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01302 Bma-Chr3:25499425 Bma04g01172 Bma-Chr4:30285245 1.10E-12 dispersed
Bma03g01302 Bma-Chr3:25499425 Bma03g00116 Bma-Chr3:909104 6.12E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g464 . . . . . Bpe15g00162 Bma03g01302 . . . . . . . . . . Bhi05g02087 Tan02g0125 . Lac12g0829 . . . . . . . . . . . . Cone8ag1559 . . . . . . . . . . . . . . . . . . Car11g01624 . . . . . . . . . . . . . . . . . Lsi11g01661 Csa06g02399 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma01g02539 . 23 322 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 2.3e-116 415.6
Bma04g01172 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma04g01175 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma08g00279 . 2 197 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 3.1e-59 227.3
Bma04g01172 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma04g01175 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma03g01302 . 1 190 Protein tyrosine phosphatase (PTP) family AT2G04550 67.9 2.5e-66 248.4
Bma03g00369 . 17 294 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 4.2e-116 414.5
Bma03g00203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 69.3 1.2e-107 386.3
Bma01g00998 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 3.6e-194 674.5
Bma01g00978 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 70.4 6.7e-193 670.2
Bma02g01405 . 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 57.0 1.1e-70 263.5
Bma03g01308 BCT 20 210 Protein tyrosine phosphatase (PTP) family AT2G32960 55.6 1.8e-65 246.1
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT2G32960 59.2 8.1e-50 194.1
Bma02g00600 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.1 1.4e-49 193.4
Bma08g00533 BCT 51 152 Protein tyrosine phosphatase (PTP) family AT2G32960 60.3 1.9e-38 156.4
Bma14g00635 . 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.4 6.6e-100 360.9
Bma01g00214 . 6 266 Protein tyrosine phosphatase (PTP) family AT2G35680 52.3 2.4e-78 289.3
Bma02g01405 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 2.5e-75 278.5
Bma03g01308 BCT 36 210 Protein tyrosine phosphatase (PTP) family AT4G03960 67.4 3.5e-69 258.1
Bma02g00600 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.5e-53 204.9
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT4G03960 66.9 3.7e-50 194.9
Bma08g00533 BCT 30 152 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 1.3e-39 159.8
Bma02g00600 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 3.7e-82 301.2
Bma03g01308 BCT 45 202 Protein tyrosine phosphatase (PTP) family AT3G02800 62.0 3.5e-56 214.9
Bma02g01405 . 47 205 Protein tyrosine phosphatase (PTP) family AT3G02800 61.0 7.8e-56 213.8
Bma08g00538 . 1 125 Protein tyrosine phosphatase (PTP) family AT3G02800 57.6 1.9e-38 156.0
Bma03g00116 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 5.9e-59 226.1
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g00514 BCT 8 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.9 1.0e-228 789.6
Bma03g01356 BCT 32 610 Protein tyrosine phosphatase (PTP) family AT3G19420 67.1 5.0e-223 770.8
Bma15g00872 . 34 591 Protein tyrosine phosphatase (PTP) family AT3G19420 57.4 4.0e-188 654.8
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma14g00419 . 56 243 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 2.8e-74 275.4
Bma12g00216 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 9.8e-111 396.7
Bma10g00319 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 2.2e-288 988.0
Bma10g00319 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 5.9e-262 900.2
Bma10g00319 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.9 7.7e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006354 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01302 Bma_Chr03 FPKM 1.118911 0.965695 2.921813 3.149904 4.193013 1.508166 4.00196 4.821522 4.327118 5.628412