Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01307 CGAATGGTGAACGTACCTGATTCAGGTGACGCTGGTGGAACAATGGATTTACCACCACCTCCTAAAGTGAATTCAGAGCTAGCTGAACGTTCTGCTCATTATGAAATTAGTAAGCGGCAGGGGGTTGGAACAGCAGGTCAAAAGATACCTTTGCTTACCAATCACTTTGATGTGTTAGTCAAAGTTTCTGATGCAGTTTTCTATCAATATGATGTTTCAATTAGTTCAGAGGATAATAAAGCCGTTGAAGGCAAGGAAATTGGAAGAAAGGTCATTGATAGGCTACACCAGATATATTCTTCTGAATTGGAGGGTAAATCATTTGCTTACGACGGAGAAAAAAATCTATACACTGTGGGTCCTCTCGCACAAAACCATTATGAATTCACAGTGGTTTTGGAGAAATCATATGCCAAACGAGAAGAAAGTTCTTGTGGCAGTGGGAGCACTAGTGGCAGTGATAAAAGATCAAAACGTTCCTTCCTGTCAAAGGTGTTCAAGGTGGATGTTGGTTATGCAACCAAAATACCATTGAATTCTGTTGCCCTTGCTCTGAAAGGGGCACCGGCAGATAATAGTACTCAAGATGCATTGAGAGTACTTGATATTATACTAAGGCAACAAGCAGCAAAAAGGGGCTGTCTTTTAGTTAGACAATCATTCTTTCATGATGACTCTGGGAATTTTACTGATGTTGGAGGAGGTGTCACAGGGGTTCGAGGGTTCCATTCAAGCTTTCGACTAAGTCAGGGTGGCTTGTCTCTGAATTTGGATGTGTCCACAACAATGATCTTGAAGCCTGGTCCTGTCATTGATTTTCTTATTGCAAATCAGAACGTTGGCGAACCTCGGTATATTGATTGGATGAAGGCAAGAAAAATGCTGAAAAATGTAAGGATTAAGACAAGTCACCGCAACATGGAATATAAAATCATTGGGCTTAGTGAAAAGCCATGCAAACAGCAATTTTTTTCTATGAAAATGAAAAAGGGTAGTGCAGATGAAGGGCAGAGTGTGGAGATTACAGTTTATGAATATTTTAGTCAATATTGCGGCATAGAACTGACTTATTCTGCACACCTTCCGTGTCTTGATGTTGGGCAGCCAAACCGGCCTAACTACTTGCCTTTGGAGCTATGTTCAGTTGTTTCCCTTCAACGCTACACCAAAGCCTTATCTTCAACGCAAAGGGCATCCTTAGTGGAGAAATCTAGGCAAAAACCCAAAGAGAAAATAGAAATTGTGACAGATAATCTAAAAAAATTTGGATATGAAGATGACCCTCTGCTTACTGCTTGTGGTATAACTATAGACAGAAAACTGATTCGGCTTGATGGCCGTGTCCTTGAGGCACCAAAGTTGAAAATGGGGGGCCATGATGATTTCATTCCTCGTAATGGACGATGGAATTTCAATAACAAGAAACTTCTGGACCCTATTCGACTCAGTCACTGGGCCTTAGTTAACTTCTCTGCACGATGTGATATTAGTTATATTTCACGGGAGCTTATCAACTGTGCAAGAAATAAGGGACTTTATATAGAAAGGCCGCATACTTTAATTGAGGAAGATCCACGAGCCAGAAATGCTGGTCCCGTTGCCAGAGTTGAAAAGATGTTTGATGTGCTGAAAGAAAAAATCCCAGGGTCAGATCCACCAACATTCATTCTATGTGTCTTGCCAGAGAAAAAGAACTCTGATATCTATGGACCTTGGAAGAAGAAATGTCTCTGTGACTTTGGTATATTTACACAATGCATGGCGCCATATAAGATCAATGATCAGTACCTCAGCAATTTACTTCTTAAAATTAACTCAAAGCTTGGAGGTGTGAATTCGTTATTGGCAATTGAACACTTGTCATTAGTTCCAGTTATAAAAGATACACCAACAATAATATTGGGCATCGACGTATCTCATGGATCTACCAGTCGATCAGATTACCCATCTATTGCTGCAGTTGTTGGCTCTCAAAGTTGGCCATTGATTTCAAGGTACAGGGCAGCTGTACGAACACAATCACCTAAACTGGAAATGGTTGATACTCTTTATAAACCTCTGGCCAATGGAAATGATGATGGTATTATTAGGGAGCTTTTAGTGGACTTCTATGCAACTAGTAAGGGGCGAAAACCAACTCAAATTATTTTGTTCAGTTTTGATTGTGTCATCAGGGATGGGGTGAGTGAATCACAATTCAATCAGGTGCTGAACATTGAGGTGGACCAGATCATTAAGGCTTATCAACATCTAGGAGAGGTTGATGTTCCCAAGTTCACGGTGATCATTGCTCAAAAGAATCATCACACAAGATTATTCCAAGCTGGTTCCCCTGAAAATGTTCCCCCTGGAACAGTCGTGGACACAAAAATTGTACATCCTAGAAATTATGATTTCTTCATGTGTGCTCAGGCTGGGATGATAGGAACTTCAAGGCCTGTGCACTATCATGTCTTGGTTGACGAGATTGGTTTTTCTCCTGATGGTGTGCAGAATCTAATCAACTCACTCTCATATGTGTATCAGAGGAGTACATGTGCAATTTCAATAGTTGCACCAATATGTTATGCTCACCTAGCTGCACACCAGATGGGACAGTTCGTCAAGTTTGAGGAAGCATCAGAAACATCCTCAGGGCAGGTTTGTCCGTCAATGCCTGAAAGTGTCCCAGTTCCAGAGCTTCCCAGGTTGTGTGAGAATGTTCGAAGATCAATGTTCTTTTGCTGA 2727 41.14 RMVNVPDSGDAGGTMDLPPPPKVNSELAERSAHYEISKRQGVGTAGQKIPLLTNHFDVLVKVSDAVFYQYDVSISSEDNKAVEGKEIGRKVIDRLHQIYSSELEGKSFAYDGEKNLYTVGPLAQNHYEFTVVLEKSYAKREESSCGSGSTSGSDKRSKRSFLSKVFKVDVGYATKIPLNSVALALKGAPADNSTQDALRVLDIILRQQAAKRGCLLVRQSFFHDDSGNFTDVGGGVTGVRGFHSSFRLSQGGLSLNLDVSTTMILKPGPVIDFLIANQNVGEPRYIDWMKARKMLKNVRIKTSHRNMEYKIIGLSEKPCKQQFFSMKMKKGSADEGQSVEITVYEYFSQYCGIELTYSAHLPCLDVGQPNRPNYLPLELCSVVSLQRYTKALSSTQRASLVEKSRQKPKEKIEIVTDNLKKFGYEDDPLLTACGITIDRKLIRLDGRVLEAPKLKMGGHDDFIPRNGRWNFNNKKLLDPIRLSHWALVNFSARCDISYISRELINCARNKGLYIERPHTLIEEDPRARNAGPVARVEKMFDVLKEKIPGSDPPTFILCVLPEKKNSDIYGPWKKKCLCDFGIFTQCMAPYKINDQYLSNLLLKINSKLGGVNSLLAIEHLSLVPVIKDTPTIILGIDVSHGSTSRSDYPSIAAVVGSQSWPLISRYRAAVRTQSPKLEMVDTLYKPLANGNDDGIIRELLVDFYATSKGRKPTQIILFSFDCVIRDGVSESQFNQVLNIEVDQIIKAYQHLGEVDVPKFTVIIAQKNHHTRLFQAGSPENVPPGTVVDTKIVHPRNYDFFMCAQAGMIGTSRPVHYHVLVDEIGFSPDGVQNLINSLSYVYQRSTCAISIVAPICYAHLAAHQMGQFVKFEEASETSSGQVCPSMPESVPVPELPRLCENVRRSMFFC 908
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 25709937 25715639 + Bma017809.1 Bma03g01307 79980

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01307 908 Pfam Piwi domain 555 869 IPR003165 GO:0003676
Bma03g01307 908 Gene3D - 448 616 - -
Bma03g01307 908 Gene3D - 622 908 IPR036397 GO:0003676
Bma03g01307 908 MobiDBLite consensus disorder prediction 1 25 - -
Bma03g01307 908 SUPERFAMILY Ribonuclease H-like 540 867 IPR012337 -
Bma03g01307 908 ProSiteProfiles Piwi domain profile. 555 869 IPR003165 GO:0003676
Bma03g01307 908 Pfam Argonaute linker 2 domain 414 455 IPR032472 -
Bma03g01307 908 CDD PAZ_argonaute_like 267 383 - -
Bma03g01307 908 SUPERFAMILY PAZ domain 262 424 IPR036085 GO:0005515
Bma03g01307 908 SMART Piwi_a_2 555 869 IPR003165 GO:0003676
Bma03g01307 908 Pfam Argonaute linker 1 domain 217 264 IPR014811 -
Bma03g01307 908 Pfam PAZ domain 271 400 IPR003100 GO:0005515
Bma03g01307 908 Gene3D paz domain 261 388 - -
Bma03g01307 908 CDD Piwi_ago-like 428 861 IPR045246 -
Bma03g01307 908 Pfam N-terminal domain of argonaute 47 205 IPR032474 -
Bma03g01307 908 SMART DUF1785_2 215 267 IPR014811 -
Bma03g01307 908 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 30 907 - -
Bma03g01307 908 PANTHER PROTEIN ARGONAUTE 6 30 907 - -
Bma03g01307 908 ProSiteProfiles PAZ domain profile. 295 384 IPR003100 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01307 K11593 ELF2C, AGO; eukaryotic translation initiation factor 2C - jre:108995817 1317.37
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01307 Bma-Chr3:25709937 Bma11g00328 Bma-Chr11:3073852 0 dispersed
Bma03g01307 Bma-Chr3:25709937 Bma07g00301 Bma-Chr7:3717719 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g445 . . . . . Bpe15g00168 Bma03g01307 . . . . . . . . . . Bhi05g02095 Tan02g0132 . . . . . . . . . . . . . . . . . . . . Blo04g01215 . . . . . . . . . . . . Car11g01621 . . . . . . . . . . . . . . . . . Lsi11g01668 Csa06g02394 . .
Vvi17g825 . . . . . . . . . . . Cma11g00069 . . . . Cpe04g01582 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01307 . . . Cmo11g00070 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006726 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01307 Bma_Chr03 FPKM 12.812154 15.591987 12.840425 12.068887 23.322935 24.442764 22.949053 19.059238 18.929323 19.534948