Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01315 ATGGGGATGAGGAGCGCAGTAGGAGAAATTGTCGAAGTCCAAGGTGGCCATATCGTCCGCTCCACTGGCAGAAAAGACCGGCACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGACGGGTTCGCCTATCAGCCCACACCGCCATTCAGTTCTACGATGTTCAAGACCGCTTAGGCTACGATCGACCCAGCAAAGCTGTTGACTGGCTAATAAAAAAGGCTAAGTCCACCATTGACAAGCTCGCAGAGCTACCACCTTGCTATCCCACAGCCGTTACTGAAGAAGGCGACACGAATAATGGCGGAAACGAGATGCTGATTGCGGCAGAGAAGTCCGAGTCATGTGGCTACAATTTCCACCCCCAAAGGCATTTGGAGGAGAGTCAAGAAAATGACAATTCGGGTTTCGTACCTCATCCGCTATCTTCCGTTCCCCTAACAGACACCATGAAAACCTTCTTCCCCACAAGCTCTGCGACGTCCTCCATCAATTTCCAGACTTACCCACCCGATATACTTTCAAGAACCGCAAACCCCACTCAAGATCTTGGCCTCTCTCTACATACTTTTCAAGATCCTGACCTGATTGACTCGCAGGTAGAGCAAATCCACTCGCCACAAAACGATCAAAACCTTTTCTCCGGTTCGCATCAGGTAGGATATGAACCGAGTTATCCGAGAATGGTGGCCTGGGGAAACAATAGAGGCGCAGAACAAGGAGGTGGGTTTGTTTTCAGCTCGATTCCAAATTTAAGCCAAGGTAGCTCGGCTGTGTTTTCTTATAGGGGGCCCCTTCAGTCCAGTTACTCGCCTTCTGTGTCAGTTCGAAGTTGGAATGATCTTTCAGTTGCTTCCGCCAAAGACCAGAAGAGTCATTCAGTTCACCAACCTTCGTTGTTTGGTACTCGTTTCGTTTCTGATGGGCTGACTGGCTTTTGCATCCCAGGTCAGATTCCGGCCAACGATGACCATGGTATGGTTTCGGAGAGATTGTCGTCTTCTTCTATGAGCTCTCACCATTAA 1026 49.9 MGMRSAVGEIVEVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSTIDKLAELPPCYPTAVTEEGDTNNGGNEMLIAAEKSESCGYNFHPQRHLEESQENDNSGFVPHPLSSVPLTDTMKTFFPTSSATSSINFQTYPPDILSRTANPTQDLGLSLHTFQDPDLIDSQVEQIHSPQNDQNLFSGSHQVGYEPSYPRMVAWGNNRGAEQGGGFVFSSIPNLSQGSSAVFSYRGPLQSSYSPSVSVRSWNDLSVASAKDQKSHSVHQPSLFGTRFVSDGLTGFCIPGQIPANDDHGMVSERLSSSSMSSHH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26090669 26091694 - Bma017824.1 Bma03g01315 79988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4 2 100 - -
Bma03g01315 341 Pfam TCP family transcription factor 23 108 IPR017887 -
Bma03g01315 341 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 117 341 IPR005333 GO:0003700
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 100 IPR005333 GO:0003700
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4 117 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01315 - - - gmx:100796390 389.808
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01348 Bma03g01315 CCT
Bma02g01348 Bma03g01315 ECH
Bma03g01315 Bma08g00624 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01315 Bma-Chr3:26090669 Bma10g00483 Bma-Chr10:5711482 1.07E-73 dispersed
Bma09g00655 Bma-Chr9:44111853 Bma03g01315 Bma-Chr3:26090669 1.38E-14 transposed
Bma03g01315 Bma-Chr3:26090669 Bma08g00546 Bma-Chr8:33039404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g381 . . . Bda13g00642 Bpe12g00216 Bpe15g00176 Bma03g01315 Bma08g00624 Cmo11g01894 Cmo19g00942 . . . . . Cpe15g00742 . Bhi05g01338 . . . . . . Cla02g01720 Cam02g1809 Cec02g1833 Cco02g1877 Clacu02g1790 Cmu02g1741 Cre02g2065 . . . Cone12ag1426 Lsi10g01577 Csa07g00407 . Cme01g00430 . Blo13g00401 . Bda15g00949 Bpe14g00626 . Bma02g01348 . . . . Cma11g01820 Cma19g00917 Car11g01507 Car19g00817 . . . . . . . . . . . . . . . . Lsi11g01448 . Chy01g00433 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57092 PF03634 TCP 1.00E-30 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01315 Bma_Chr03 FPKM 82.22316 90.166718 1.81487 1.42119 1.761207 1.140383 1.442265 0.0 0.0 0.0