Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01315 ATGGGGATGAGGAGCGCAGTAGGAGAAATTGTCGAAGTCCAAGGTGGCCATATCGTCCGCTCCACTGGCAGAAAAGACCGGCACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGACGGGTTCGCCTATCAGCCCACACCGCCATTCAGTTCTACGATGTTCAAGACCGCTTAGGCTACGATCGACCCAGCAAAGCTGTTGACTGGCTAATAAAAAAGGCTAAGTCCACCATTGACAAGCTCGCAGAGCTACCACCTTGCTATCCCACAGCCGTTACTGAAGAAGGCGACACGAATAATGGCGGAAACGAGATGCTGATTGCGGCAGAGAAGTCCGAGTCATGTGGCTACAATTTCCACCCCCAAAGGCATTTGGAGGAGAGTCAAGAAAATGACAATTCGGGTTTCGTACCTCATCCGCTATCTTCCGTTCCCCTAACAGACACCATGAAAACCTTCTTCCCCACAAGCTCTGCGACGTCCTCCATCAATTTCCAGACTTACCCACCCGATATACTTTCAAGAACCGCAAACCCCACTCAAGATCTTGGCCTCTCTCTACATACTTTTCAAGATCCTGACCTGATTGACTCGCAGGTAGAGCAAATCCACTCGCCACAAAACGATCAAAACCTTTTCTCCGGTTCGCATCAGGTAGGATATGAACCGAGTTATCCGAGAATGGTGGCCTGGGGAAACAATAGAGGCGCAGAACAAGGAGGTGGGTTTGTTTTCAGCTCGATTCCAAATTTAAGCCAAGGTAGCTCGGCTGTGTTTTCTTATAGGGGGCCCCTTCAGTCCAGTTACTCGCCTTCTGTGTCAGTTCGAAGTTGGAATGATCTTTCAGTTGCTTCCGCCAAAGACCAGAAGAGTCATTCAGTTCACCAACCTTCGTTGTTTGGTACTCGTTTCGTTTCTGATGGGCTGACTGGCTTTTGCATCCCAGGTCAGATTCCGGCCAACGATGACCATGGTATGGTTTCGGAGAGATTGTCGTCTTCTTCTATGAGCTCTCACCATTAA 1026 49.9 MGMRSAVGEIVEVQGGHIVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSTIDKLAELPPCYPTAVTEEGDTNNGGNEMLIAAEKSESCGYNFHPQRHLEESQENDNSGFVPHPLSSVPLTDTMKTFFPTSSATSSINFQTYPPDILSRTANPTQDLGLSLHTFQDPDLIDSQVEQIHSPQNDQNLFSGSHQVGYEPSYPRMVAWGNNRGAEQGGGFVFSSIPNLSQGSSAVFSYRGPLQSSYSPSVSVRSWNDLSVASAKDQKSHSVHQPSLFGTRFVSDGLTGFCIPGQIPANDDHGMVSERLSSSSMSSHH 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 26090669 26091694 - Bma017824.1 Bma03g01315 79988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4 2 100 - -
Bma03g01315 341 Pfam TCP family transcription factor 23 108 IPR017887 -
Bma03g01315 341 ProSiteProfiles TCP domain profile. 24 82 IPR017887 -
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 117 341 IPR005333 GO:0003700
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 2 100 IPR005333 GO:0003700
Bma03g01315 341 PANTHER TRANSCRIPTION FACTOR TCP4 117 341 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01348 Bma03g01315 CCT
Bma02g01348 Bma03g01315 ECH
Bma03g01315 Bma08g00624 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01315 Bma-Chr3:26090669 Bma10g00483 Bma-Chr10:5711482 1.07E-73 dispersed
Bma09g00655 Bma-Chr9:44111853 Bma03g01315 Bma-Chr3:26090669 1.38E-14 transposed
Bma03g01315 Bma-Chr3:26090669 Bma08g00546 Bma-Chr8:33039404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57092 PF03634 TCP 1.00E-30 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01315 - - gmx:100796390 389.808