Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01343 ATGTCGAATCAACAGAAGGATTCCTGCCGGCAGTTCGATCCTTTCCACTACAACTTCCACGACGGTAATCGGCCCTGCCTTCCCTTCTTCGATGAATCTCCATCACTGTTTTACAATCAACAAGCCGCCTCGAAAGAGCTATGTCCCTCCTCATACATGACATTCACTGAAACTTTGCATACTTCCATGGATTATGACACTCTTTCGAGAGCCTTTGATTTGCCTTGTTCCTCGTCGGAAGTCATTTCTCCCATCGAAAATGACTGGAAAAAAGCCAGCGTTGTCGGAGAGTCGGGAGGGAAGGGTGAAACCCCATCATCACCGAATTCCTCATTTTCTTCTTCCTCTAACGAGGGAGTTGCAGAAGCAGATTCGTCTAAAAAGGACGAGGATCAGGCAAAAGCTAGCGAAGACGGAGATGATGACAATTCTAAAAAACAGAACAAATCTAAGAAGAAAGAAAAATCCAAAAAAGAGCCGAGGTTTGCCTTTCTGACCAAGAGCGAGATCGATCACCTTGAAGATGGTTACAGATGGAGGAAGTACGGACAGAAGGCTGTCAAAAATAGCCCCTATCCAAGAAGCTATTACAGATGCACTGCTCAGAAATGCGGAGTGAAAAAGAGAGTGGAAAGATCATTCCAAGATCCTTCCGTAGTGATAACAACCTACGAAGGGCAACATATTCACCAGTGTCCGGCGACGCTCCGGGGAAATTCGCAGGGAATGTTGTCACCTTCTCTCTTTGCAGCTGCATCAGCTCCGGTGCCGCCTTTTCTCCCTCCGGAACTGCTGTCTCAGTTTTTCCCATCCAATATTAACCAAGCTGATGCTGGTGGTTCCATGCTCTATCAAAACCTCAATCTCCATCCTCACCATCTTCAGTTTTCTGACTATGGCCTACCGCAAGATTTAATTCCATCTTCATTCCCTCATAAGCAAGACCCATGA 951 46.27 MSNQQKDSCRQFDPFHYNFHDGNRPCLPFFDESPSLFYNQQAASKELCPSSYMTFTETLHTSMDYDTLSRAFDLPCSSSEVISPIENDWKKASVVGESGGKGETPSSPNSSFSSSSNEGVAEADSSKKDEDQAKASEDGDDDNSKKQNKSKKKEKSKKEPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTAQKCGVKKRVERSFQDPSVVITTYEGQHIHQCPATLRGNSQGMLSPSLFAAASAPVPPFLPPELLSQFFPSNINQADAGGSMLYQNLNLHPHHLQFSDYGLPQDLIPSSFPHKQDP 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 28207900 28209291 + Bma017870.1 Bma03g01343 80016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01343 316 MobiDBLite consensus disorder prediction 122 149 - -
Bma03g01343 316 PANTHER WRKY TRANSCRIPTION FACTOR 71-RELATED 1 309 - -
Bma03g01343 316 Pfam WRKY DNA -binding domain 174 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma03g01343 316 Gene3D WRKY domain 160 226 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma03g01343 316 MobiDBLite consensus disorder prediction 100 121 - -
Bma03g01343 316 ProSiteProfiles WRKY domain profile. 168 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma03g01343 316 MobiDBLite consensus disorder prediction 95 160 - -
Bma03g01343 316 SUPERFAMILY WRKY DNA-binding domain 166 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma03g01343 316 SMART WRKY_cls 173 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma03g01343 316 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 309 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01343 Bma-Chr3:28207900 Bma10g01123 Bma-Chr10:36032713 5.29E-164 dispersed
Bma03g01343 Bma-Chr3:28207900 Bma02g00935 Bma-Chr2:49202332 5.89E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57093 PF03106 WRKY 6.90E-25 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01343 - - zju:107416121 314.694