Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01352 ATGGTGCTCGGAGGCGAAGATGCGGAGCAAATGCTCCATAAGACGAAGCATAAGGGAAAGCATGACAAGCCCAAGCCTTGGGACGAAGACCCAAACATCGACCGGTGGAAGGTTGAAAAATTTGATCCCGCTTGGAATGCTGGTGGCATGCTCGAAGTCAGCTCATTCTCCACTCTGTTTCCTCAGTATAGAGAAAAATATTTGCAAGAAGCTTGGCCAATGGTGAGATCTGCTCTCAGCGAGCATGGCATTTCATGCGAATTGAATCTGGTTGAGGGGTCAATGACAGTTTCAACATCCAGAAAGACCAGAGATCCATATATTATTGTTAAGGCTAGAGATCTTATTAAACTTTTGTCAAGAAGTGTTCCTGCCCCTCAGGCAATAAAAATATTAGACGATGAAATGCAGGGCGATGTTATTAAGATTGGAAACCTGGTCCGTAACAAGGAGCGACTTGTTAAACGTAGACAGCATCTCATGGGACCAAATGCTTTCACATTGAAGGCACTTGAAATATTGACAGGTTGCTACATTCTTGTCCAGGGCAATACAGTTTCTGCTATGGGCTCGTTCAAAGGTTTAAAGCAAGTAAGGAAGGTAGTGGAAGATTGTATTCTAAATAAAATGCATCCTCTGTACAATATTAAGATTCTCATGATGAAAAAGGAACTTGCCAATGATCCTGCCCTTGTAAATGAAAACTGGGATAGATTTCTTCCTAAATTTAAAAAGAAAAATGTTAAACAAAAGAAGGTTAAAGGTAAAGAGAAGAAACCATACACGCCTTTTCCTCCTCCTCAACCACCCAGTAAGATTGACTTACAATTGGAGAGTGGTGAATACTTTTTGAATGAAAAAAACAAAGTAGCAAAGAAATGGGAGGAGAAGAAAGAAAAGCAAGCAGAAAAAACCGCCGAGAACAAAAGGAAAAGAGAATCTTCATTTCTTCCTCCTGAGGTTTGTAATATTCTTTTACACATTGTGCTCCAATATGGCTGA 1002 40.42 MVLGGEDAEQMLHKTKHKGKHDKPKPWDEDPNIDRWKVEKFDPAWNAGGMLEVSSFSTLFPQYREKYLQEAWPMVRSALSEHGISCELNLVEGSMTVSTSRKTRDPYIIVKARDLIKLLSRSVPAPQAIKILDDEMQGDVIKIGNLVRNKERLVKRRQHLMGPNAFTLKALEILTGCYILVQGNTVSAMGSFKGLKQVRKVVEDCILNKMHPLYNIKILMMKKELANDPALVNENWDRFLPKFKKKNVKQKKVKGKEKKPYTPFPPPQPPSKIDLQLESGEYFLNEKNKVAKKWEEKKEKQAEKTAENKRKRESSFLPPEVCNILLHIVLQYG 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29185008 29187843 + Bma017884.1 Bma03g01352 80025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01352 333 MobiDBLite consensus disorder prediction 251 272 - -
Bma03g01352 333 PIRSF KRR1 4 325 IPR024166 -
Bma03g01352 333 Pfam Krr1 KH1 domain 54 134 IPR041174 -
Bma03g01352 333 Gene3D K Homology domain, type 1 135 238 IPR036612 GO:0003723
Bma03g01352 333 PANTHER HIV-1 REV BINDING PROTEIN 2, 3 8 320 IPR024166 -
Bma03g01352 333 MobiDBLite consensus disorder prediction 1 32 - -
Bma03g01352 333 MobiDBLite consensus disorder prediction 292 314 - -
Bma03g01352 333 Gene3D K Homology domain, type 1 48 134 IPR036612 GO:0003723
Bma03g01352 333 Coils Coil 284 304 - -
Bma03g01352 333 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 240 IPR036612 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01352 K06961 KRR1; ribosomal RNA assembly protein - egr:104448674 488.034
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g01352 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006812 2 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01352 Bma_Chr03 FPKM 0.253314 0.385497 9.153832 9.154692 3.87546 3.909477 3.904093 0.672578 0.876404 0.8018