Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01355 ATGAAACAGAAGGTTTCTCCGACCCATGGATACAGGCTCCCTATTTTACAGCGCTTTCATCGGCTTTCAAACCCACCATCTTCTCCGCCCCTCTCTCTCTCTCTCCTCCGTTACGTTCTCTGTTCCACCTCATTGCTTTCCCTTCAGATGTTTTTATTTATTCATCCAACCCAACCTCTTCTGCTCCCATCTAATCTCCCTCTCCCTCACTCGCGCTCCGCAGACATGTCTTCCTCTGCCAGATTTTTCTTCTGCTCCTCCCCTGCCGCTTTCGTCGCCGTTCTGCTGTTTTTCTCTGTCTTTTCTTCCGCTTTTGCTTCCTCTGATTTCTCCATTATTGACTACGACTCGAAGCACCACATGGGCGCTCCTGATCGCACCGATAAGGAGGTTAGGGAAATTTATGAGTCGTGGGTAGTCAAGCATGGCAAAGCCTACAACGCTCTTGGCGAGAAGGAGAAGAGATTTCAGATCTTTAAGGATAATCTGAGGTTCGTTGAGGAGCACAACCAGGAGAACCGGACGTACAAGGTCGGTCTGAACCGATTTGCTGATCTCACGAACGAGGAGTACCGGGCCACGTTTTTGGGATCCAAAAGCAGGCGGAAGGCTCGGCTCTCTGAGACCAAGAGCGACAGGTATCTGCATCGGGCTGGCGATGAGTCGCCGGATTCCATTGATTGGAGACAACACGGCGCTGTCGGGCCTGTTAAGGATCAAGGCCAATGTGGGAGTTGCTGGGCGTTCTCGACGATAGCTGCTGTGGAAGGAATAAATAAAATTGTTACAGGCGAGCATATCTCTTTGTCAGAGCAAGAACTAGTGGACTGTGACAGATCATACAACCAGGGATGCAATGGAGGTCTTATGGATTATGCATTCGAATTCATCATGAACAATGGTGGCATTGATTCCGAAGAGGACTACCCTTACAGGGCTCGTGATGGTGGCTGTGATCCGATCCGGAAAAATGCTAAGTTTGTGACTATCGACGGGTACGAAGATGTTCCAGAGAACGATGAGAACTCATTGAAGAAGGCGGTGTCAAACCAGCCTGTCAGCGTGGCCATTGAAGCCGGCGGCAGAGCTTTCCAACTTTACCAATCGGGCGTCTTTACCGGGCTATGCGGCACGGATTTGGATCATGGCGTTGTTGCAGTCGGATACGGTACTGAAAATGGAGTCGATTACTGGACGGTGAGAAACTCGTGGGGACCCAATTGGGGCGAAAGCGGTTATATCAGATTAGAGCGTAACTTGGCCGACGCGACGACCGGTAAATGTGGAATTGCGATAGAGCCTTCGTATCCCATCAAGAAGGGACTAAACCCACCCAAGCCAAGCCCATCGCCACCATCGCCGGTGAAGCCCTCCACCGTGTGCGATGAATATAACTCATGCCCAGAGAAAACCACTTGCTGCTGTATCTATCAATATGGAACTTACTGCTTTGGCTGGGGATGTTGCCCTCTCGAGTCTGCCACTTGCTGCGACGACCATTACAGTTGCTGCCCTCAAGACTATCCGATTTGCGATCTCGAGGCCGAAACTTGCCTGATGAGCAAGAACAATCCCGTGGGAGTGAAGCCACTAAAGCGTCTCCCAGCAAAGCGAACAAGGACTCCGCTGAATTTCGAGAAAAGGGCGTAG 1650 50.91 MKQKVSPTHGYRLPILQRFHRLSNPPSSPPLSLSLLRYVLCSTSLLSLQMFLFIHPTQPLLLPSNLPLPHSRSADMSSSARFFFCSSPAAFVAVLLFFSVFSSAFASSDFSIIDYDSKHHMGAPDRTDKEVREIYESWVVKHGKAYNALGEKEKRFQIFKDNLRFVEEHNQENRTYKVGLNRFADLTNEEYRATFLGSKSRRKARLSETKSDRYLHRAGDESPDSIDWRQHGAVGPVKDQGQCGSCWAFSTIAAVEGINKIVTGEHISLSEQELVDCDRSYNQGCNGGLMDYAFEFIMNNGGIDSEEDYPYRARDGGCDPIRKNAKFVTIDGYEDVPENDENSLKKAVSNQPVSVAIEAGGRAFQLYQSGVFTGLCGTDLDHGVVAVGYGTENGVDYWTVRNSWGPNWGESGYIRLERNLADATTGKCGIAIEPSYPIKKGLNPPKPSPSPPSPVKPSTVCDEYNSCPEKTTCCCIYQYGTYCFGWGCCPLESATCCDDHYSCCPQDYPICDLEAETCLMSKNNPVGVKPLKRLPAKRTRTPLNFEKRA 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29483959 29486095 + Bma017896.1 Bma03g01355 80028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01355 549 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 240 251 IPR000169 -
Bma03g01355 549 PRINTS Papain cysteine protease (C1) family signature 240 255 IPR000668 GO:0006508|GO:0008234
Bma03g01355 549 PRINTS Papain cysteine protease (C1) family signature 382 392 IPR000668 GO:0006508|GO:0008234
Bma03g01355 549 PRINTS Papain cysteine protease (C1) family signature 397 403 IPR000668 GO:0006508|GO:0008234
Bma03g01355 549 SMART Inhibitor_I29_2 135 191 IPR013201 -
Bma03g01355 549 PANTHER CYSTEINE PROTEASE 116 466 - -
Bma03g01355 549 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 116 466 - -
Bma03g01355 549 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 397 416 IPR025661 -
Bma03g01355 549 Pfam Papain family cysteine protease 223 438 IPR000668 GO:0006508|GO:0008234
Bma03g01355 549 SMART pept_c1 222 438 IPR000668 GO:0006508|GO:0008234
Bma03g01355 549 CDD Peptidase_C1A 223 437 IPR039417 -
Bma03g01355 549 Gene3D Cysteine proteinases 111 440 - -
Bma03g01355 549 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 380 390 IPR025660 -
Bma03g01355 549 SUPERFAMILY Cysteine proteinases 127 438 IPR038765 -
Bma03g01355 549 SUPERFAMILY Granulin repeat 459 492 - -
Bma03g01355 549 Gene3D Granulin 458 521 IPR037277 -
Bma03g01355 549 SMART GRAN_2 461 518 IPR000118 -
Bma03g01355 549 Pfam Cathepsin propeptide inhibitor domain (I29) 135 191 IPR013201 -
Bma03g01355 549 Pfam Granulin 472 519 IPR000118 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01355 K25900 RD21; cysteine proteinase RD21 [EC:3.4.22.-] - zju:107426962 724.546
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01355 Bma08g00518 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01292 Bma-Chr2:55109150 Bma03g01355 Bma-Chr3:29483959 3.19E-113 dispersed
Bma03g01355 Bma-Chr3:29483959 Bma08g00518 Bma-Chr8:27987224 0 dispersed
Bma08g00599 Bma-Chr8:37917164 Bma03g01355 Bma-Chr3:29483959 2.88E-83 dispersed
Bma01g00744 Bma-Chr1:6845557 Bma03g01355 Bma-Chr3:29483959 1.80E-126 transposed
Bma07g00571 Bma-Chr7:7958620 Bma03g01355 Bma-Chr3:29483959 5.80E-72 transposed
Bma11g00994 Bma-Chr11:45219764 Bma03g01355 Bma-Chr3:29483959 2.24E-10 transposed
Bma03g01355 Bma-Chr3:29483959 Bma08g00516 Bma-Chr8:27938636 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g605 . . . . . Bpe12g00293 . . Cmo19g00605 . . . . . . Cpe04g00295 Cpe15g00476 . . . . . . . Cla02g00624 Cam02g0658 Cec02g0661 Cco02g0685 Clacu02g0666 . Cre02g0979 . . Cone3ag0991 Cone10ag1012 Lsi03g00521 Csa07g00735 . Cme01g00073 . . Bda15g00848 Bda14g01450 . . Bma03g01355 Bma08g00518 . . . Cma11g01732 . Car11g01109 Car19g00445 . . . . . . . . . . . . . . . . . . . .
Vvi12g211 . . . . Bpe12g00293 . Bma03g01355 Bma08g00518 . . . Cma20g00586 . Car20g00553 . . . . . . . . . . . . . . . . . Cone3ag1318 Cone10ag1266 . . . . . . . . . . . . . . . . Cmo20g00649 . . . . Cpe16g00415 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001585 7 2 1 3 5 2 3 1 2 1 1 1 2 2 2 1 0 5 4 2 2 2 2 2 2 1 2 5 3 3 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01355 Bma_Chr03 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 17.176798 18.193233 18.544106