Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma03g01356 ATGGACGCAAAACCAGACGATACTTCAGCATCATCTCAGGCAAACACTTCTGCTGTTACACCCTCTGAAGTACAACATAATATTGCAGTCACTGCTGAATCTGAGAATTTGAAACGTGATGTGCCATCTAGACTATCTTCTACTGGCATATCTTCTTGGGCTAAGAGTTTGAAGATTACACAGCCTTTGATTGGATCACAAGATGGTTCACCAACTGCTCAGGCAGGCAAATCAAGTTTTTCACGTTTCACCAGTGGCTTTGGATTGCAGTTGTCTCCAAAAGATCCTTCTCCAAAAGATGCCTCTGACAGCACTTTAAAATCTCAGGAACCTGGTTTATTCGGGACACTTACAAAAGGTTTAGTTGATTCTTCTAGAAGTGCTGTGAAGGCTGTACAGGCCAAAGCTAGGCATGCTGTCTCTCAAAATAAACGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACATATATCACAGAAAACATAATTGCTATGGGATTCCCGGCTGGCGATATGAGTTCAGGCTTTTTTGGTTATGTTGAGGGTTTCTATCGGAACCACATGGAAGAAGTTCTTAAATTCTTTGAAACTCATCATAAGGACAAGTACAAAGTGTACAATCTTTGTTCTGAGAGGCTGTACGATGCTTCATTGTTTGAAGGAAAGGTGGCTAGTTTTCCTTTTGATGACCATAATTGCCCCCCAGCTCGATTGATAATATCATTTTGTCAAAGTGCTTACTCGTGGCTGAAAGAAGATATTGAAAATGTAGTGGTTGTGCATTGCAAAGCAGGAATGGCTAGAACAGGTTTGATGATATCTAGTCTTCTTCTATACCTGAAGTTTTTTCCAACTGCCGAGGAGTCCATTGACTACTACAACCAGAAAAGGTGTTTTGATGGCAAAGGCCTTATCCTACCTAGTCAGATTAGGTATGTCAAGTATTTTGAGCGCATATTAACATACTTCAATGGTGAAAATCCACCTGGCCGCAGGTGCCTGCTTAGAGGATTTCGGCTTCATAGATGTCCGCATTGGACCAGGCCGTCTATAACTGTGTCTGATCATAATGGTGTTCTTTTCTCCTCCAAAAAACATCCAAGAACCAAAGATATCTCTCCAGAAGACTTTTGGTTTAGTGCACCAAAGAAGGGGGTGATGGTTTTTGCTTTACCTGGGGAGCCTGGTCTAACGGAGTTGGTGGGGGACTTTAAGATCCACTTCCATGACCGCCAAGGAGATTTTTACTGTTGGCTAAACACAACTATGATTGAAAATCGCAAAATTCTGGACACTAATGATCTTGATGGGTTTGACAAGAGGAAACTGCCTTCCCCAGGATTTCAGGTCGAGGTTGTTTTAGTGGATTATGATGGTAACATTCCTACGTCACCGGATACCGCAAATAATACAAAGAAGTCAGATGAAAGATCAAGTTCGACTCCTGCTCCACTCGATGGGGGTTCAGCTCCTCCGAAACCTACAGAAAATCCCATAAATGAAGATAAATACGATGCATCTTCAGGCTTGGCAGCAGATGAGGGTGGTTCTTCAAAGGGCGAGCAAGGTGTTTCTTCTGGTTCAGTGATTGAACCTGGAAGTGCCACCTCTAATTCTACGGGTAAGGCTGAAGATGAAGTTAGGAATTTAACACAGGCAACGGAAGAAGTTTCTTTAGTAGACAGTATCCCAAAACGAATCGCAACCTCTGGGGAGCCCAAAAATGATGCTGGGACAGAAGTTTCAACCCCCGAAAGTGAGTTCAAGGCAATGGCTGCTGATGCTTCTGTCTTTACCTTTGGCGACGAGGACGATTACGAGACTGATTGA 1833 42.94 MDAKPDDTSASSQANTSAVTPSEVQHNIAVTAESENLKRDVPSRLSSTGISSWAKSLKITQPLIGSQDGSPTAQAGKSSFSRFTSGFGLQLSPKDPSPKDASDSTLKSQEPGLFGTLTKGLVDSSRSAVKAVQAKARHAVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVLKFFETHHKDKYKVYNLCSERLYDASLFEGKVASFPFDDHNCPPARLIISFCQSAYSWLKEDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIDYYNQKRCFDGKGLILPSQIRYVKYFERILTYFNGENPPGRRCLLRGFRLHRCPHWTRPSITVSDHNGVLFSSKKHPRTKDISPEDFWFSAPKKGVMVFALPGEPGLTELVGDFKIHFHDRQGDFYCWLNTTMIENRKILDTNDLDGFDKRKLPSPGFQVEVVLVDYDGNIPTSPDTANNTKKSDERSSSTPAPLDGGSAPPKPTENPINEDKYDASSGLAADEGGSSKGEQGVSSGSVIEPGSATSNSTGKAEDEVRNLTQATEEVSLVDSIPKRIATSGEPKNDAGTEVSTPESEFKAMAADASVFTFGDEDDYETD 610
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 29597487 29603603 + Bma017898.1 Bma03g01356 80029

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma03g01356 610 MobiDBLite consensus disorder prediction 460 610 - -
Bma03g01356 610 Pfam C2 domain of PTEN tumour-suppressor protein 332 455 IPR014020 -
Bma03g01356 610 MobiDBLite consensus disorder prediction 87 112 - -
Bma03g01356 610 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 14 610 - -
Bma03g01356 610 Gene3D Protein tyrosine phosphatase superfamily 130 327 IPR029021 -
Bma03g01356 610 Gene3D - 333 458 - -
Bma03g01356 610 PANTHER PHOSPHATIDYLINOSITOL 3,4,5-TRISPHOSPHATE 3-PHOSPHATASE AND PROTEIN-TYROSINE-PHOSPHATASE PTEN2A 14 610 - -
Bma03g01356 610 SMART PTEN_C2_2 329 457 IPR014020 -
Bma03g01356 610 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 158 325 IPR029021 -
Bma03g01356 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 401 455 IPR035892 -
Bma03g01356 610 MobiDBLite consensus disorder prediction 463 486 - -
Bma03g01356 610 ProSitePatterns Tyrosine specific protein phosphatases active site. 261 271 IPR016130 GO:0016311|GO:0016791
Bma03g01356 610 MobiDBLite consensus disorder prediction 1 32 - -
Bma03g01356 610 ProSiteProfiles Phosphatase tensin-type domain profile. 145 324 IPR029023 -
Bma03g01356 610 MobiDBLite consensus disorder prediction 1 49 - -
Bma03g01356 610 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 238 298 IPR000387 GO:0016311|GO:0016791
Bma03g01356 610 ProSiteProfiles C2 tensin-type domain profile. 331 458 IPR014020 -
Bma03g01356 610 MobiDBLite consensus disorder prediction 520 559 - -
Bma03g01356 610 CDD PTP_PTEN 155 320 IPR045101 GO:0016791
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma03g01356 K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [EC:3.1.3.16 3.1.3.48 3.1.3.67] - mnt:21410065 883.248
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g01356 Bma08g00514 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00437 Bma-Chr2:6538711 Bma03g01356 Bma-Chr3:29597487 2.66E-46 transposed
Bma15g00872 Bma-Chr15:25723058 Bma03g01356 Bma-Chr3:29597487 0 transposed
Bma03g01356 Bma-Chr3:29597487 Bma08g00514 Bma-Chr8:27821531 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g606 . . . . . Bpe12g00294 . . . Cmo11g01384 . . . . . Cpe04g00296 Cpe15g00475 . . . . . . . Cla02g00625 . Cec02g0662 . . Cmu02g0661 . . . Cone3ag0992 Cone10ag1013 Lsi03g00522 Csa07g00734 . Cme01g00074 . . Bda15g00847 Bda14g01451 . . Bma03g01356 Bma08g00514 . . . Cma11g01730 Cma19g00587 Car11g01110 . . . . . . . . . . . . . . . . . . . Chy01g00080 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma01g02539 . 23 322 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 2.3e-116 415.6
Bma04g01172 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma04g01175 . 1 129 Protein tyrosine phosphatase (PTP) family AT3G23610 51.9 7.9e-37 150.2
Bma08g00279 . 2 197 Protein tyrosine phosphatase (PTP) family AT5G23720 61.2 3.1e-59 227.3
Bma04g01172 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma04g01175 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 57.2 2.6e-41 165.2
Bma03g01302 . 1 190 Protein tyrosine phosphatase (PTP) family AT2G04550 67.9 2.5e-66 248.4
Bma03g00369 . 17 294 Protein tyrosine phosphatase (PTP) family AT3G52180 70.5 4.2e-116 414.5
Bma03g00203 . 27 289 Protein tyrosine phosphatase (PTP) family AT3G10940 69.3 1.2e-107 386.3
Bma01g00998 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 71.0 3.6e-194 674.5
Bma01g00978 . 137 580 Protein tyrosine phosphatase (PTP) family AT3G01510 70.4 6.7e-193 670.2
Bma02g01405 . 15 211 Protein tyrosine phosphatase (PTP) family AT2G32960 57.0 1.1e-70 263.5
Bma03g01308 BCT 20 210 Protein tyrosine phosphatase (PTP) family AT2G32960 55.6 1.8e-65 246.1
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT2G32960 59.2 8.1e-50 194.1
Bma02g00600 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.1 1.4e-49 193.4
Bma08g00533 BCT 51 152 Protein tyrosine phosphatase (PTP) family AT2G32960 60.3 1.9e-38 156.4
Bma14g00635 . 1 319 Protein tyrosine phosphatase (PTP) family AT2G35680 56.4 6.6e-100 360.9
Bma01g00214 . 6 266 Protein tyrosine phosphatase (PTP) family AT2G35680 52.3 2.4e-78 289.3
Bma02g01405 . 42 211 Protein tyrosine phosphatase (PTP) family AT4G03960 72.4 2.5e-75 278.5
Bma03g01308 BCT 36 210 Protein tyrosine phosphatase (PTP) family AT4G03960 67.4 3.5e-69 258.1
Bma02g00600 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.7 3.5e-53 204.9
Bma08g00538 . 1 133 Protein tyrosine phosphatase (PTP) family AT4G03960 66.9 3.7e-50 194.9
Bma08g00533 BCT 30 152 Protein tyrosine phosphatase (PTP) family AT4G03960 60.0 1.3e-39 159.8
Bma02g00600 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 70.1 3.7e-82 301.2
Bma03g01308 BCT 45 202 Protein tyrosine phosphatase (PTP) family AT3G02800 62.0 3.5e-56 214.9
Bma02g01405 . 47 205 Protein tyrosine phosphatase (PTP) family AT3G02800 61.0 7.8e-56 213.8
Bma08g00538 . 1 125 Protein tyrosine phosphatase (PTP) family AT3G02800 57.6 1.9e-38 156.0
Bma03g00116 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 63.0 5.9e-59 226.1
Bma02g00437 . 1 411 Protein tyrosine phosphatase (PTP) family AT5G39400 64.0 7.6e-151 530.4
Bma08g00514 BCT 8 605 Protein tyrosine phosphatase (PTP) family AT3G19420 66.9 1.0e-228 789.6
Bma03g01356 BCT 32 610 Protein tyrosine phosphatase (PTP) family AT3G19420 67.1 5.0e-223 770.8
Bma15g00872 . 34 591 Protein tyrosine phosphatase (PTP) family AT3G19420 57.4 4.0e-188 654.8
Bma08g00514 BCT 42 605 Protein tyrosine phosphatase (PTP) family AT3G50110 60.2 5.6e-185 644.4
Bma03g01356 BCT 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.3 2.4e-180 629.0
Bma15g00872 . 42 591 Protein tyrosine phosphatase (PTP) family AT3G50110 59.6 1.9e-177 619.4
Bma02g00008 . 1 1289 Protein tyrosine phosphatase (PTP) family AT5G58160 50.4 2.1e-284 975.7
Bma04g00272 . 566 933 Protein tyrosine phosphatase (PTP) family AT5G58160 51.8 1.4e-102 371.7
Bma08g01169 . 6 849 Protein tyrosine phosphatase (PTP) family AT3G10550 66.6 0.0e+00 1132.9
Bma08g01169 . 6 851 Protein tyrosine phosphatase (PTP) family AT5G04540 62.9 1.3e-311 1065.4
Bma14g00419 . 56 243 Protein tyrosine phosphatase (PTP) family AT3G44620 64.9 2.8e-74 275.4
Bma12g00216 . 19 317 Protein tyrosine phosphatase (PTP) family AT2G35320 62.0 9.8e-111 396.7
Bma10g00319 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 70.5 2.2e-288 988.0
Bma10g00319 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 5.9e-262 900.2
Bma10g00319 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.9 7.7e-187 650.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma03g01356 Bma_Chr03 FPKM 0.0 0.0 1.394245 2.161509 1.358259 2.237272 2.381087 0.0 0.0 0.214482